C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group nucleosomal binding domain 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000275036 HMGN3-002 ENSG00000118418 9606 - 6:79201245-79234689 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000275036
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000275036 7.043±0.00 9.709±0.00 3.385±0.00 6.009±0.67 9.370±5.67 7.310±4.97 7.612±5.59 19.231±10.68 4.285±0.95 9.617±5.36 2.920±0.00 20.970±10.60 45.301±25.72 29.751±6.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000621 CIL_000621_0002 CGP 6:78935867-79234738
CIL_000626 CIL_000626_0002 CGP 6:79201245-79537458

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000785 IEA chromatin
GO:0005634 IDA:IEA nucleus
GO:0005737 IDA cytoplasm
GO:0008150 ND biological_process
GO:0016568 IEA chromatin modification
GO:0031492 IEA nucleosomal DNA binding
GO:0046966 NAS thyroid hormone receptor binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000161796 Hmgn3-002 protein_coding Mus_musculus 0 937
ENSMUST00000190580 Hmgn3-009 retained_intron Mus_musculus 0 651
ENSMUST00000162246 Hmgn3-001 protein_coding Mus_musculus 0 564
ENSMUST00000185315 Hmgn3-003 protein_coding Mus_musculus 0 564
ENSMUST00000189777 Hmgn3-007 processed_transcript Mus_musculus 0 562
ENSMUST00000187193 Hmgn3-006 protein_coding Mus_musculus 0 560
ENSMUST00000191105 Hmgn3-005 retained_intron Mus_musculus 0 427
ENSMUST00000190154 Hmgn3-004 nonsense_mediated_decay Mus_musculus 0 346

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