C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000282223 SPOCK1-201 ENSG00000152377 9606 - 5:136975300-137267065 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBreastColonKidneyLungOvaryPlacentaENST00000282223
Transcript ID Adrenal Bladder Breast Colon Kidney Lung Ovary Placenta
ENST00000282223 0.398±0.00 0.806±0.00 0.879±0.00 0.103±0.00 0.014±0.00 0.139±0.00 0.306±0.00 2.976±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005P0 CIL_0005P0_0001 CGP 5:136213320-137598379
CIL_0005P1 CIL_0005P1_0001 CGP 5:136975298-137736090

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0005578 IEA proteinaceous extracellular matrix
GO:0007165 IEA signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000185502 Spock1-002 protein_coding Mus_musculus 0 1768
ENSMUST00000186271 Spock1-005 protein_coding Mus_musculus 0 1764
ENSMUST00000172326 Spock1-201 protein_coding Mus_musculus 0 1435
ENSMUST00000189373 Spock1-003 protein_coding Mus_musculus 0 1000
ENSMUST00000185905 Spock1-004 retained_intron Mus_musculus 0 996
ENSMUST00000187852 Spock1-001 protein_coding Mus_musculus 0 996

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