C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin specific peptidase 12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000282344 USP12-001 ENSG00000152484 9606 - 13:27066142-27171896 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000282344
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000282344 6.952±0.00 5.268±0.00 4.852±0.00 7.288±1.92 7.606±0.86 13.408±5.43 3.071±0.74 7.941±0.00 7.559±4.39 10.309±0.40 2.467±0.88 4.963±2.37 3.741±0.40 9.055±1.91

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000G9 CIL_0000G9_0002 CGP 13:26755200-27171896
CIL_0000GA CIL_0000GA_0002 CGP 13:27066142-27256691

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004197 IMP cysteine-type endopeptidase activity
GO:0004221 IDA ubiquitin thiolesterase activity
GO:0004843 IDA ubiquitin-specific protease activity
GO:0005515 IPI protein binding
GO:0005575 ND cellular_component
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0016579 IDA protein deubiquitination
GO:0036459 IEA ubiquitinyl hydrolase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000085614 Usp12-001 protein_coding Mus_musculus 0 2008
ENSMUST00000138202 Usp12-002 processed_transcript Mus_musculus 0 1297
ENSMUST00000174341 Gm8902-001 processed_pseudogene Mus_musculus 0 1282
ENSMUST00000173463 Gm18560-001 processed_pseudogene Mus_musculus 0 1018
ENSMUST00000124009 Usp12-003 processed_transcript Mus_musculus 0 588
ENSMUST00000117395 Gm12636-001 processed_pseudogene Mus_musculus 0 520
ENSMUST00000108908 Scn8a-203 protein_coding Mus_musculus 4e-18 99
ENSMUST00000108909 Scn8a-204 protein_coding Mus_musculus 4e-18 99
ENSMUST00000108910 Scn8a-205 protein_coding Mus_musculus 4e-18 99
ENSMUST00000082209 Scn8a-201 protein_coding Mus_musculus 4e-18 99
ENSMUST00000167004 Agpat6-201 protein_coding Mus_musculus 0.0003 53

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