C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group nucleosome binding domain 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000288344 HMGN1-004 ENSG00000205581 9606 - 21:39342315-39348991 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryPlacentaTestisENST00000288344
Transcript ID Ovary Placenta Testis
ENST00000288344 35.186±0.00 8.600±0.00 11.619±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004KG CIL_0004KG_0001 CGP 21:39184176-39349647
CIL_0003GM CIL_0003GM_0001 CGP 21:39342315-39428528

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000785 IEA chromatin
GO:0005634 IEA nucleus
GO:0031492 IEA nucleosomal DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000050884 Hmgn1-001 protein_coding Mus_musculus 0 508
ENSMUST00000145713 Hmgn1-003 retained_intron Mus_musculus 0 285

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