C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: high mobility group nucleosome binding domain 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000205581 HMGN1 9606 - 21:39342315-39349647 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000288344 HMGN1-004 39342315-39348991 nonsense_mediated_decay
  ENST00000380747 HMGN1-013 39342879-39349647 protein_coding
  ENST00000380748 HMGN1-018 39342692-39349053 protein_coding
  ENST00000380749 HMGN1-001 39342315-39349200 protein_coding
  ENST00000419378 HMGN1-015 39342788-39349040 nonsense_mediated_decay
  ENST00000431390 HMGN1-002 39342315-39349140 nonsense_mediated_decay
  ENST00000436324 HMGN1-009 39342646-39349088 nonsense_mediated_decay
  ENST00000443046 HMGN1-017 39343009-39349054 nonsense_mediated_decay
  ENST00000463631 HMGN1-005 39348065-39349054 retained_intron
  ENST00000464078 HMGN1-007 39343137-39349054 retained_intron
  ENST00000471260 HMGN1-020 39347492-39348620 processed_transcript
  ENST00000479586 HMGN1-019 39347336-39349015 processed_transcript
  ENST00000482192 HMGN1-008 39342804-39348623 processed_transcript
  ENST00000482733 HMGN1-014 39347995-39349020 retained_intron
  ENST00000485550 HMGN1-021 39342909-39348597 processed_transcript
  ENST00000486741 HMGN1-006 39342315-39349099 retained_intron
  ENST00000489072 HMGN1-012 39342800-39348862 processed_transcript
  ENST00000490032 HMGN1-010 39342978-39348339 processed_transcript
  ENST00000491183 HMGN1-016 39347147-39349067 processed_transcript
  ENST00000492280 HMGN1-003 39342315-39349344 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000288344ENST00000380749ENST00000431390ENST00000464078ENST00000479586ENST00000486741ENST00000489072ENST00000492280
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000288344 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 35.186±0.00 8.600±0.00 11.619±0.00
ENST00000380749 38.088±0.00 12.319±0.00 6.537±0.00 6.400±3.38 21.325±8.28 17.905±4.82 4.615±2.21 21.847±10.50 13.447±5.08 31.387±21.87 2.102±0.82 54.972±34.69 32.054±6.32 31.469±15.03
ENST00000431390 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.174±0.00
ENST00000464078 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.894±0.00 N/A N/A N/A
ENST00000479586 N/A N/A N/A N/A N/A N/A 1.772±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000486741 N/A 2.482±0.00 1.448±0.00 0.947±0.10 1.930±0.00 3.195±0.00 0.701±0.10 1.857±0.00 N/A 2.575±0.00 N/A 5.175±1.45 N/A 4.795±0.00
ENST00000489072 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.895±0.00
ENST00000492280 N/A 3.323±0.00 N/A 1.367±0.00 2.495±0.00 N/A N/A N/A N/A N/A 0.771±0.00 4.164±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004KG CIL_0004KG_0001 CGP 21:39184176-39349647
CIL_0003GM CIL_0003GM_0001 CGP 21:39342315-39428528

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000720 IEA pyrimidine dimer repair by nucleotide-excision repair
GO:0000785 IEA chromatin
GO:0003677 TAS DNA binding
GO:0003682 IEA chromatin binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006283 IEA transcription-coupled nucleotide-excision repair
GO:0006325 IEA chromatin organization
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0010224 IEA response to UV-B
GO:0010225 IEA response to UV-C
GO:0031492 IEA nucleosomal DNA binding
GO:0032786 TAS positive regulation of DNA-templated transcription, elongation
GO:0040034 IEA regulation of development, heterochronic
GO:0048597 IEA post-embryonic camera-type eye morphogenesis
GO:0050678 IEA regulation of epithelial cell proliferation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000040681 Hmgn1 high mobility group nucleosomal binding domain 1 protein_coding Mus_musculus

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