C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: core-binding factor, beta subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000290858 CBFB-001 ENSG00000067955 9606 + 16:67029147-67101058 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaENST00000290858
Transcript ID Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000290858 1.471±0.00 2.948±0.04 1.343±0.76 2.187±0.00 0.977±0.19 4.849±2.84 3.968±0.00 4.417±2.23 1.563±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WN CIL_0007WN_0001 VISTA 16:66603173-67205657
CIL_0005T3 CIL_0005T3_0001 CGP 16:66988589-67101058
CIL_0005T2 CIL_0005T2_0001 CGP 16:67029116-67148539

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0003713 IEA transcription coactivator activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0016020 IDA membrane
GO:2001141 IEA regulation of RNA biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000109392 Cbfb-003 protein_coding Mus_musculus 0 1437
ENSMUST00000052209 Cbfb-001 protein_coding Mus_musculus 0 990
ENSMUST00000109395 Cbfb-002 protein_coding Mus_musculus 0 850
ENSMUST00000109394 Cbfb-004 protein_coding Mus_musculus 0 833
ENSMUST00000186070 Cbfb-006 retained_intron Mus_musculus 0 326
ENSMUST00000190915 Cbfb-007 processed_transcript Mus_musculus 0 311
ENSMUST00000187323 Cbfb-008 processed_transcript Mus_musculus 0 285

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