C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L39-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000296277 RPL39L-002 ENSG00000163923 9606 - 3:187120948-187139523 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000296277
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000296277 3.194±0.00 6.679±0.00 2.839±1.05 5.268±0.00 3.860±3.48 1.157±1.09 2.371±0.00 0.647±0.14 2.819±0.00 25.419±19.64 3.135±0.44 77.450±14.90

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008LA CIL_0008LA_0001 VISTA 3:186647123-187250687

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005840 IEA ribosome
GO:0006412 IEA translation
GO:0007283 IEP spermatogenesis
GO:0022625 NAS cytosolic large ribosomal subunit

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000121292 Rpl39l-002 protein_coding Mus_musculus 0 206
ENSMUST00000044103 Rpl39l-001 protein_coding Mus_musculus 0 206
ENSMUST00000115231 Rpl39-001 protein_coding Mus_musculus 0 196
ENSMUST00000142604 Rpl39-ps-002 processed_transcript Mus_musculus 0 191
ENSMUST00000146505 Rpl39-ps-001 transcribed_processed_pseudogene Mus_musculus 2e-38 163
ENSMUST00000191066 RP23-127L14.1-001 processed_pseudogene Mus_musculus 2e-38 163
ENSMUST00000117602 Gm15148-001 processed_pseudogene Mus_musculus 2e-38 163
ENSMUST00000121971 Gm12013-001 processed_pseudogene Mus_musculus 3e-37 159
ENSMUST00000121969 Gm11334-001 processed_pseudogene Mus_musculus 2e-34 150
ENSMUST00000118985 Gm14541-001 processed_pseudogene Mus_musculus 2e-34 150
ENSMUST00000138799 Rpl39-002 retained_intron Mus_musculus 6e-34 148
ENSMUST00000119534 Gm15067-001 processed_pseudogene Mus_musculus 8e-33 145
ENSMUST00000118637 Gm11694-001 processed_pseudogene Mus_musculus 1e-31 141

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