C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: BRCA1 associated protein-1 (ubiquitin carboxy-terminal hydrolase)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000296288 BAP1-010 ENSG00000163930 9606 - 3:52401026-52409914 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainHeartLiverLungMuscleOvaryPlacentaTestisENST00000296288
Transcript ID Adipose Adrenal Bladder Brain Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000296288 4.245±0.00 8.394±0.00 0.972±0.00 6.524±4.87 5.139±0.00 0.967±0.00 4.640±0.00 4.861±4.25 3.017±1.64 6.789±1.72 10.303±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WP CIL_0007WP_0001 VISTA 3:52127966-52731115

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004843 IEA ubiquitin-specific protease activity
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006511 IEA ubiquitin-dependent protein catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000022458 Bap1-001 protein_coding Mus_musculus 0 1858
ENSMUST00000190788 Bap1-002 retained_intron Mus_musculus 0 1303
ENSMUST00000189834 Bap1-003 retained_intron Mus_musculus 0 582
ENSMUST00000185987 Bap1-006 retained_intron Mus_musculus 0 566
ENSMUST00000188453 Bap1-005 nonsense_mediated_decay Mus_musculus 0 566
ENSMUST00000187156 Bap1-007 nonsense_mediated_decay Mus_musculus 0 555
ENSMUST00000185700 Bap1-008 retained_intron Mus_musculus 0 518
ENSMUST00000188714 Bap1-004 retained_intron Mus_musculus 0 198

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