C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: caseinolytic mitochondrial matrix peptidase chaperone subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000300107 CLPX-001 ENSG00000166855 9606 - 15:65148219-65185342 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000300107
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000300107 3.607±0.00 4.565±0.00 0.907±0.00 4.450±0.99 4.785±0.00 2.893±0.88 4.676±1.50 5.599±0.70 5.580±3.10 1.925±0.48 5.018±3.18 6.081±1.44 4.212±0.83 5.271±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RY CIL_0007RY_0001 VISTA 15:64785331-65389080
CIL_0006TY CIL_0006TY_0002 CGP 15:65117379-65185342

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004176 IDA ATP-dependent peptidase activity
GO:0005515 IPI protein binding
GO:0005524 ISS:IEA ATP binding
GO:0005739 IDA mitochondrion
GO:0005743 ISS mitochondrial inner membrane
GO:0005759 IDA mitochondrial matrix
GO:0006200 IDA ATP catabolic process
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006457 IEA protein folding
GO:0008134 IEA transcription factor binding
GO:0009368 IDA endopeptidase Clp complex
GO:0009841 IDA mitochondrial endopeptidase Clp complex
GO:0010952 IDA positive regulation of peptidase activity
GO:0016504 IDA peptidase activator activity
GO:0016887 ISS:IEA ATPase activity
GO:0042645 IDA mitochondrial nucleoid
GO:0046872 IEA metal ion binding
GO:0051082 IEA unfolded protein binding
GO:0051603 IDA proteolysis involved in cellular protein catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000015501 Clpx-001 protein_coding Mus_musculus 0 2959
ENSMUST00000113824 Clpx-201 protein_coding Mus_musculus 0 2043
ENSMUST00000147279 Clpx-003 protein_coding Mus_musculus 0 595
ENSMUST00000148632 Clpx-002 retained_intron Mus_musculus 0 588
ENSMUST00000156289 Rgs20-006 retained_intron Mus_musculus 0.000007 58

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