C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB40A, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000304236 RAB40A-001 ENSG00000172476 9606 - X:103499754-103519489 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverOvaryPlacentaTestisENST00000304236
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Ovary Placenta Testis
ENST00000304236 0.128±0.00 0.237±0.00 0.321±0.17 0.304±0.21 0.088±0.00 0.073±0.00 0.233±0.00 0.479±0.46 0.027±0.00 0.388±0.00 0.594±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 IEA GTPase activity
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005886 IEA plasma membrane
GO:0006184 IEA GTP catabolic process
GO:0006886 IEA intracellular protein transport
GO:0006913 IEA nucleocytoplasmic transport
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0016567 IEA protein ubiquitination
GO:0035556 IEA intracellular signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000106107 Rab40b-001 protein_coding Mus_musculus 0 782
ENSMUST00000179998 Rab40c-202 protein_coding Mus_musculus 0 422
ENSMUST00000026826 Rab40c-201 protein_coding Mus_musculus 0 422
ENSMUST00000167018 Rab40c-005 protein_coding Mus_musculus 0 422
ENSMUST00000167626 Rab40c-001 protein_coding Mus_musculus 0 422
ENSMUST00000164738 Rab40c-006 protein_coding Mus_musculus 0 228
ENSMUST00000164982 Rab40c-004 protein_coding Mus_musculus 0 228
ENSMUST00000166146 Rab40c-003 nonsense_mediated_decay Mus_musculus 8e-25 119

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