C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GDNF family receptor alpha 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000306793 GFRA2-002 ENSG00000168546 9606 - 8:21692018-21788819 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000306793
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000306793 0.696±0.00 3.608±0.00 0.029±0.00 6.024±2.67 1.266±1.14 0.847±0.00 0.321±0.00 0.221±0.02 0.314±0.09 0.528±0.00 0.066±0.03 0.552±0.30 4.460±1.01 1.981±0.53

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000810 CIL_000810_0001 VISTA 8:21687877-22288944
CIL_0005VE CIL_0005VE_0003 CGP 8:21690403-21913860

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000022699 Gfra2-201 protein_coding Mus_musculus 0 1860
ENSDART00000105709 gfra1b-202 protein_coding Danio_rerio 1e-36 159
ENSDART00000005456 gfra1b-201 protein_coding Danio_rerio 1e-36 159
ENSDART00000150320 gfra1b-001 protein_coding Danio_rerio 1e-36 159
ENSMUST00000169850 Gfra1-201 protein_coding Mus_musculus 3e-33 148
ENSMUST00000129100 Gfra1-004 protein_coding Mus_musculus 3e-33 148
ENSMUST00000140141 Gfra1-003 nonsense_mediated_decay Mus_musculus 3e-33 148
ENSMUST00000152507 Gfra1-002 protein_coding Mus_musculus 3e-33 148
ENSMUST00000026076 Gfra1-001 protein_coding Mus_musculus 3e-33 148

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