C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synuclein, beta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000310112 SNCB-001 ENSG00000074317 9606 - 5:176620084-176630364 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryENST00000310112
Transcript ID Ovary
ENST00000310112 0.365±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098R CIL_00098R_0001 VISTA 5:176349731-176951529
CIL_0002ND CIL_0002ND_0001 CGP 5:176595802-176630556
CIL_0002NC CIL_0002NC_0001 CGP 5:176620084-176646641

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004859 TAS phospholipase inhibitor activity
GO:0005509 IDA calcium ion binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005739 IEA mitochondrion
GO:0005794 IDA Golgi apparatus
GO:0007268 IEA synaptic transmission
GO:0016234 IDA inclusion body
GO:0030426 IEA growth cone
GO:0042417 IEA dopamine metabolic process
GO:0043014 IEA alpha-tubulin binding
GO:0043025 IEA neuronal cell body
GO:0043086 TAS negative regulation of catalytic activity
GO:0043195 IEA terminal bouton
GO:0043524 IEA negative regulation of neuron apoptotic process
GO:0043679 IEA axon terminus
GO:0045202 IEA synapse
GO:0048487 IEA beta-tubulin binding
GO:0050808 IEA synapse organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000134110 Sncb-004 protein_coding Mus_musculus 0 582
ENSMUST00000036825 Sncb-001 protein_coding Mus_musculus 0 582
ENSMUST00000153829 Sncb-002 retained_intron Mus_musculus 0 381
ENSMUST00000138067 Sncb-003 retained_intron Mus_musculus 0 206

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