C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: presenilin associated, rhomboid-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000311101 PARL-002 ENSG00000175193 9606 - 3:183829390-183884888 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000311101
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000311101 9.576±0.00 7.839±0.00 2.990±0.00 7.945±0.00 13.805±0.00 12.006±0.00 3.314±2.77 3.003±2.26 4.304±1.48 5.940±0.57 4.459±1.06 6.251±3.44 4.791±0.90 8.418±1.82

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005G0 CIL_0005G0_0001 CGP 3:183815876-183884933

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004175 IGI endopeptidase activity
GO:0004252 IEA serine-type endopeptidase activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005739 IDA mitochondrion
GO:0005743 TAS mitochondrial inner membrane
GO:0006508 IGI proteolysis
GO:0016021 IEA integral component of membrane
GO:0033619 NAS membrane protein proteolysis
GO:1903214 NAS regulation of protein targeting to mitochondrion
GO:2000377 IMP regulation of reactive oxygen species metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000048642 Parl-001 protein_coding Mus_musculus 0 662
ENSMUST00000136700 Parl-005 processed_transcript Mus_musculus 0 562
ENSMUST00000136252 Parl-002 nonsense_mediated_decay Mus_musculus 0 560
ENSMUST00000120117 Gm13181-001 processed_pseudogene Mus_musculus 0 549
ENSMUST00000133153 Parl-009 nonsense_mediated_decay Mus_musculus 0 536
ENSMUST00000123070 Parl-003 retained_intron Mus_musculus 0 462
ENSMUST00000152887 Parl-004 processed_transcript Mus_musculus 0 394
ENSMUST00000155832 Parl-007 retained_intron Mus_musculus 0 326
ENSMUST00000153275 Parl-010 retained_intron Mus_musculus 0 315
ENSMUST00000143648 Parl-006 retained_intron Mus_musculus 0 287
ENSMUST00000117482 Gm14994-001 processed_pseudogene Mus_musculus 0 239
ENSMUST00000126001 Parl-008 retained_intron Mus_musculus 5e-22 110

Loading