C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox B9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000000010 Hoxb9-001 ENSMUSG00000020875 10090 + 11:96271457-96276595 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000000010
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000000010 0.918±0.44 85.195±11.68 1.163±0.20 0.014±0.00 0.311±0.14 11.285±2.42 8.665±1.91 0.034±0.03 0.150±0.04 1.125±0.38 0.298±0.19 0.313±0.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZM CIL_0007ZM_0002 VISTA 11:95992065-96592579
CIL_0004H7 CIL_0004H7_0002 CGP 11:96271457-96285315

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005739 IEA mitochondrion
GO:0006351 IEA transcription, DNA-templated
GO:0009952 IGI anterior/posterior pattern specification
GO:0030879 IGI mammary gland development
GO:0043565 IEA sequence-specific DNA binding
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0048706 IGI embryonic skeletal system development
GO:0060070 IEA canonical Wnt signaling pathway
GO:0060326 IEA cell chemotaxis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000249499 HOXD9-001 protein_coding Homo_sapiens 0 215
ENST00000283921 HOXA10-001 protein_coding Homo_sapiens 3e-27 128
ENST00000311177 HOXB9-001 protein_coding Homo_sapiens 0 1389
ENST00000396344 HOXA10-003 protein_coding Homo_sapiens 2e-27 128
ENST00000519593 HOXA10-006 processed_transcript Homo_sapiens 7e-28 128
ENST00000521421 HOXA10-005 processed_transcript Homo_sapiens 1e-27 128
ENST00000524368 HOXA10-004 processed_transcript Homo_sapiens 1e-27 128
ENST00000613671 HOXA10-201 protein_coding Homo_sapiens 2e-27 128
ENST00000613849 HOXD9-201 protein_coding Homo_sapiens 0 215

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