C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox B9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000174042 Hoxb9-002 ENSMUSG00000020875 10090 + 11:96271523-96276595 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000174042
Transcript ID Adipose Adrenal Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000174042 0.145±0.03 32.614±0.00 0.296±0.17 6.638±0.00 4.928±0.31 0.023±0.01 0.080±0.05 0.126±0.06 0.888±0.50 0.127±0.08 0.003±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZM CIL_0007ZM_0002 VISTA 11:95992065-96592579
CIL_0004H7 CIL_0004H7_0002 CGP 11:96271457-96285315

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0009952 IGI anterior/posterior pattern specification
GO:0030879 IGI mammary gland development
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0048706 IGI embryonic skeletal system development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000249499 HOXD9-001 protein_coding Homo_sapiens 0 213
ENST00000283921 HOXA10-001 protein_coding Homo_sapiens 3e-27 128
ENST00000311177 HOXB9-001 protein_coding Homo_sapiens 0 457
ENST00000396344 HOXA10-003 protein_coding Homo_sapiens 2e-27 128
ENST00000519593 HOXA10-006 processed_transcript Homo_sapiens 7e-28 128
ENST00000521421 HOXA10-005 processed_transcript Homo_sapiens 1e-27 128
ENST00000524368 HOXA10-004 processed_transcript Homo_sapiens 1e-27 128
ENST00000613671 HOXA10-201 protein_coding Homo_sapiens 2e-27 128
ENST00000613849 HOXD9-201 protein_coding Homo_sapiens 0 213

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