C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | homeobox C5 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000312492  |
HOXC5-001 |
ENSG00000172789 |
9606 | + |
12:54032853-54035358  |
protein_coding |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0007SU | CIL_0007SU_0001 | VISTA | 12:53718454-54321661 |
| CIL_00084M | CIL_00084M_0001 | VISTA | 12:53732854-54334005 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0003677 | IEA | DNA binding |
| GO:0003700 | IEA | sequence-specific DNA binding transcription factor activity |
| GO:0005634 | IDA | nucleus |
| GO:0006351 | IEA | transcription, DNA-templated |
| GO:0006357 | TAS | regulation of transcription from RNA polymerase II promoter |
| GO:0009952 | IEA | anterior/posterior pattern specification |
| GO:0030054 | IDA | cell junction |
| GO:0043565 | IEA | sequence-specific DNA binding |
| GO:0048706 | IEA | embryonic skeletal system development |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000001709
|
Hoxc5-001 | protein_coding | Mus_musculus | 0 | 1748 |
|
ENSMUST00000174869
|
Hoxc5-002 | processed_transcript | Mus_musculus | 0 | 468 |
|
ENSDART00000057730
|
dbx2-201 | protein_coding | Danio_rerio | 0.00000000002 | 75 |
|
ENSMUST00000114425
|
Hoxa9-002 | protein_coding | Mus_musculus | 0.0000002 | 62 |
|
ENSMUST00000154641
|
Hoxa9-004 | processed_transcript | Mus_musculus | 0.0000002 | 62 |
|
ENSMUST00000048680
|
Hoxa9-001 | protein_coding | Mus_musculus | 0.0000002 | 62 |
