C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: developing brain homeobox 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000057730 dbx2-201 ENSDARG00000039510 7955 - Zv9_scaffold3556:4519-13947 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainKidneyENSDART00000057730
Transcript ID Brain Kidney
ENSDART00000057730 2.498±1.89 0.976±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000001709 Hoxc5-001 protein_coding Mus_musculus 0.00000000004 75
ENSMUST00000019117 Hoxb1-001 protein_coding Mus_musculus 0.00000002 66
ENSMUST00000048680 Hoxa9-001 protein_coding Mus_musculus 0.0000003 62
ENSMUST00000114425 Hoxa9-002 protein_coding Mus_musculus 0.00000009 62
ENSMUST00000123805 Hoxb1-002 processed_transcript Mus_musculus 0.000000006 66
ENSMUST00000154641 Hoxa9-004 processed_transcript Mus_musculus 0.00000007 62
ENSMUST00000173348 Nkx1-1-001 protein_coding Mus_musculus 0.0000000002 71
ENSMUST00000174869 Hoxc5-002 processed_transcript Mus_musculus 0.000000000008 75
ENST00000312492 HOXC5-001 protein_coding Homo_sapiens 0.00000000002 75
ENST00000343483 HOXA9-001 protein_coding Homo_sapiens 0.00000002 66
ENST00000396345 HOXA9-003 protein_coding Homo_sapiens 0.000000007 66
ENST00000422806 NKX1-1-001 protein_coding Homo_sapiens 0.00000001 66
ENST00000470747 HOXA10-HOXA9-001 protein_coding Homo_sapiens 0.000000006 66
ENST00000487384 HOXA9-004 processed_transcript Homo_sapiens 0.000000006 66
ENST00000497089 HOXA9-002 processed_transcript Homo_sapiens 0.00000001 66
ENST00000513209 RP11-834C11.12-001 protein_coding Homo_sapiens 0.00000000001 75

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