C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ceramide synthase 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000317551 CERS5-001 ENSG00000139624 9606 - 12:50129798-50167422 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000317551
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000317551 9.812±0.00 7.262±0.00 0.818±0.00 4.263±0.00 4.605±3.31 3.811±1.83 1.824±0.00 5.120±4.44 1.398±0.52 3.263±2.04 0.562±0.00 11.505±8.85 13.191±1.58 7.035±2.17

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PE CIL_0008PE_0001 VISTA 12:49905565-50507504
CIL_0008CC CIL_0008CC_0001 VISTA 12:49906068-50507455
CIL_00033M CIL_00033M_0002 CGP 12:50111979-50167533
CIL_0000LJ CIL_0000LJ_0001 CGP 12:50129306-50283546

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0005783 IEA endoplasmic reticulum
GO:0005789 TAS endoplasmic reticulum membrane
GO:0006665 TAS sphingolipid metabolic process
GO:0016021 IEA integral component of membrane
GO:0030148 TAS sphingolipid biosynthetic process
GO:0044281 TAS small molecule metabolic process
GO:0046513 IDA ceramide biosynthetic process
GO:0050291 IDA sphingosine N-acyltransferase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000023762 Cers5-001 protein_coding Mus_musculus 0 1131
ENSMUST00000109035 Cers5-002 protein_coding Mus_musculus 0 966
ENSMUST00000175876 Cers5-003 protein_coding Mus_musculus 0 590
ENSMUST00000176248 Cers5-007 nonsense_mediated_decay Mus_musculus 0 569
ENSMUST00000176627 Cers5-004 protein_coding Mus_musculus 0 265
ENSMUST00000176970 Cers5-006 protein_coding Mus_musculus 0 244

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