C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000LJ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000139624-ENSG00000050405 CGP 9606 12:50129306-50283546
GeneTranscriptPositionBiotype
ENSG00000050405 (LIMA1)
LIM domain and actin binding 1 		ENST00000341247 (LIMA1-003) 50175788-50283546 protein_coding
ENST00000394943 (LIMA1-001) 50175788-50283506 protein_coding
ENST00000547825 (LIMA1-007) 50175788-50202112 protein_coding
ENST00000549064 (LIMA1-014) 50177698-50182179 retained_intron
ENST00000550592 (LIMA1-008) 50222318-50249893 protein_coding
ENST00000550611 (LIMA1-010) 50222167-50224481 processed_transcript
ENST00000551486 (LIMA1-012) 50204344-50222165 retained_intron
ENST00000551691 (LIMA1-009) 50222260-50283484 protein_coding
ENST00000552008 (LIMA1-011) 50192452-50220556 processed_transcript
ENST00000552045 (LIMA1-016) 50195618-50200892 retained_intron
ENST00000552338 (LIMA1-015) 50177774-50196047 processed_transcript
ENST00000552491 (LIMA1-017) 50175788-50200847 protein_coding
ENST00000552720 (LIMA1-005) 50177006-50283456 nonsense_mediated_decay
ENST00000552783 (LIMA1-002) 50175790-50222705 protein_coding
ENST00000552823 (LIMA1-006) 50175788-50222348 protein_coding
ENST00000552909 (LIMA1-004) 50176885-50222356 protein_coding
ENSG00000139624 (CERS5)
ceramide synthase 5 		ENST00000317551 (CERS5-001) 50129798-50167422 protein_coding
ENST00000380189 (CERS5-003) 50129798-50167320 nonsense_mediated_decay
ENST00000422340 (CERS5-201) 50129306-50167533 protein_coding
ENST00000438450 (CERS5-002) 50134620-50167393 nonsense_mediated_decay
ENST00000542320 (CERS5-026) 50135519-50167300 nonsense_mediated_decay
ENST00000546406 (CERS5-018) 50129858-50133165 retained_intron
ENST00000546514 (CERS5-012) 50143165-50167359 nonsense_mediated_decay
ENST00000546676 (CERS5-022) 50135440-50137793 retained_intron
ENST00000547138 (CERS5-024) 50135406-50137816 processed_transcript
ENST00000547455 (CERS5-011) 50143138-50167369 nonsense_mediated_decay
ENST00000547787 (CERS5-004) 50129799-50167303 nonsense_mediated_decay
ENST00000547800 (CERS5-020) 50135732-50167343 protein_coding
ENST00000547852 (CERS5-007) 50165936-50167300 processed_transcript
ENST00000548930 (CERS5-009) 50142080-50144499 processed_transcript
ENST00000548942 (CERS5-023) 50133785-50135537 processed_transcript
ENST00000549089 (CERS5-015) 50135958-50143372 retained_intron
ENST00000549389 (CERS5-010) 50143074-50167328 nonsense_mediated_decay
ENST00000549942 (CERS5-013) 50144019-50167505 processed_transcript
ENST00000550079 (CERS5-021) 50130413-50134828 retained_intron
ENST00000550258 (CERS5-008) 50143080-50167326 nonsense_mediated_decay
ENST00000550547 (CERS5-016) 50134573-50142093 protein_coding
ENST00000550899 (CERS5-025) 50144349-50167369 nonsense_mediated_decay
ENST00000550919 (CERS5-019) 50129798-50136013 protein_coding
ENST00000551005 (CERS5-005) 50129799-50144136 retained_intron
ENST00000551384 (CERS5-014) 50143072-50144371 retained_intron
ENST00000551697 (CERS5-027) 50129792-50167302 nonsense_mediated_decay
ENST00000551757 (CERS5-028) 50133079-50134706 retained_intron
ENST00000553122 (CERS5-017) 50129798-50135792 protein_coding
ENSG00000212496 (RNU6-1093P)
RNA, U6 small nuclear 1093, pseudogene 		ENST00000391194 (RNU6-1093P-201) 50256238-50256344 snRNA
ENSG00000221604 (MIR1293)
microRNA 1293 		ENST00000408677 (MIR1293-201) 50234142-50234212 miRNA
ENSG00000257256 (RP3-405J10.4)
 ENST00000551284 (RP3-405J10.4-001) 50219604-50229984 antisense
ENSG00000257298 (RP3-405J10.3)
 ENST00000552061 (RP3-405J10.3-001) 50185580-50191363 sense_intronic
ENSG00000257531 (RP3-405J10.2)
 ENST00000548666 (RP3-405J10.2-001) 50217662-50218343 transcribed_processed_pseudogene
ENSG00000272368 (RP4-605O3.4)
 ENST00000548468 (RP4-605O3.4-001) 50112197-50165618 antisense
ENST00000552815 (RP4-605O3.4-002) 50112254-50123782 antisense
CIL_0000LJ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000023021-ENSMUSG00000023022 CGP 10090 15:99734881-99875428
GeneTranscriptPositionBiotype
ENSMUSG00000023021 (Cers5)
ceramide synthase 5 		ENSMUST00000023762 (Cers5-001) 99735592-99772601 protein_coding
ENSMUST00000109035 (Cers5-002) 99734881-99772462 protein_coding
ENSMUST00000175876 (Cers5-003) 99739408-99772885 protein_coding
ENSMUST00000176248 (Cers5-007) 99735311-99772465 nonsense_mediated_decay
ENSMUST00000176627 (Cers5-004) 99745942-99772092 protein_coding
ENSMUST00000176970 (Cers5-006) 99737335-99747070 protein_coding
ENSMUSG00000023022 (Lima1)
LIM domain and actin binding 1 		ENSMUST00000073691 (Lima1-001) 99778470-99875428 protein_coding
ENSMUST00000109024 (Lima1-003) 99778470-99820143 protein_coding
ENSMUST00000171450 (Lima1-002) 99841228-99875416 retained_intron
ENSMUST00000172119 (Lima1-004) 99781239-99783973 retained_intron
ENSMUSG00000065643 (Gm25897)
predicted gene, 25897 		ENSMUST00000083709 (Gm25897-201) 99803020-99803126 snRNA
ENSMUSG00000090406 (Gm17058)
predicted gene 17058 		ENSMUST00000168951 (Gm17058-001) 99765991-99782332 antisense
ENSMUSG00000090500 (Gm17057)
predicted gene 17057 		ENSMUST00000169887 (Gm17057-001) 99819020-99834570 antisense
ENSMUSG00000092014 (Gm4468)
predicted gene 4468 		ENSMUST00000170206 (Gm4468-001) 99810289-99810582 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000LJ_0001ENSG00000050405ENST00000341247ENST00000394943ENST00000547825ENST00000549064ENST00000550592ENST00000550611ENST00000551486ENST00000551691ENST00000552008ENST00000552045ENST00000552338ENST00000552491ENST00000552720ENST00000552783ENST00000552823ENST00000552909ENSG00000139624ENST00000317551ENST00000380189ENST00000422340ENST00000438450ENST00000542320ENST00000546406ENST00000546514ENST00000546676ENST00000547138ENST00000547455ENST00000547787ENST00000547800ENST00000547852ENST00000548930ENST00000548942ENST00000549089ENST00000549389ENST00000549942ENST00000550079ENST00000550258ENST00000550547ENST00000550899ENST00000550919ENST00000551005ENST00000551384ENST00000551697ENST00000551757ENST00000553122ENSG00000212496ENST00000391194ENSG00000221604ENST00000408677ENSG00000257256ENST00000551284ENSG00000257298ENST00000552061ENSG00000257531ENST00000548666ENSG00000272368ENST00000548468ENST00000552815CIL_0000LJ_0002ENSMUSG00000023021ENSMUST00000023762ENSMUST00000109035ENSMUST00000175876ENSMUST00000176248ENSMUST00000176627ENSMUST00000176970ENSMUSG00000023022ENSMUST00000073691ENSMUST00000109024ENSMUST00000171450ENSMUST00000172119ENSMUSG00000065643ENSMUST00000083709ENSMUSG00000090406ENSMUST00000168951ENSMUSG00000090500ENSMUST00000169887ENSMUSG00000092014ENSMUST00000170206
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000LJ_0001ENSG00000050405ENST00000341247ENST00000394943ENST00000547825ENST00000552491ENST00000552720ENST00000552783ENST00000552823ENST00000552909ENSG00000139624ENST00000317551ENST00000380189ENST00000422340ENST00000438450ENST00000546406ENST00000550079ENST00000550547ENST00000550899ENST00000550919ENST00000551005ENST00000551757ENST00000553122ENSG00000212496ENST00000391194ENSG00000221604ENST00000408677ENSG00000257256ENST00000551284ENSG00000257298ENST00000552061ENSG00000257531ENST00000548666ENSG00000272368ENST00000548468CIL_0000LJ_0002ENSMUSG00000023021ENSMUST00000023762ENSMUST00000109035ENSMUST00000175876ENSMUST00000176248ENSMUST00000176627ENSMUSG00000023022ENSMUST00000073691ENSMUST00000109024ENSMUSG00000065643ENSMUST00000083709ENSMUSG00000090406ENSMUST00000168951ENSMUSG00000090500ENSMUST00000169887ENSMUSG00000092014ENSMUST00000170206
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000050405 ENST00000341247 3.780±0.00 N/A N/A 0.319±0.00 5.988±3.17 9.512±3.30 2.231±0.00 3.465±3.02 1.810±0.00 5.041±2.08 N/A 6.879±2.83 8.511±3.95 4.136±1.45
ENST00000394943 N/A 3.347±0.00 N/A 0.799±0.00 N/A N/A N/A N/A 0.740±0.00 N/A 0.798±0.00 6.554±0.00 3.113±0.00 N/A
ENST00000547825 2.559±0.00 3.041±0.00 N/A 0.515±0.17 7.182±0.00 N/A 0.838±0.00 N/A 3.083±0.00 3.356±0.00 0.393±0.00 2.187±0.12 N/A N/A
ENST00000549064 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550592 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550611 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551486 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551691 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552008 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552045 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552338 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552491 7.937±0.00 4.996±0.00 1.647±0.00 1.088±0.00 13.733±0.00 5.386±0.00 N/A 9.612±0.00 N/A 10.923±0.00 N/A 11.284±0.00 5.194±1.25 4.877±0.00
ENST00000552720 N/A N/A 2.674±0.00 N/A 6.131±0.00 8.289±0.00 0.320±0.00 N/A 3.489±0.00 3.465±0.00 N/A 6.121±0.00 N/A N/A
ENST00000552783 3.175±0.00 2.588±0.00 N/A 0.656±0.18 9.565±1.77 4.639±0.37 0.789±0.00 0.509±0.00 7.713±0.00 9.176±0.00 0.170±0.00 4.252±1.10 3.884±0.71 N/A
ENST00000552823 N/A N/A N/A N/A N/A N/A 1.354±0.00 4.446±0.00 1.407±0.00 N/A 0.457±0.00 4.781±1.66 8.302±2.97 3.114±0.63
ENST00000552909 N/A N/A N/A 1.255±0.00 N/A N/A 0.514±0.00 N/A N/A N/A 0.440±0.00 N/A N/A N/A
ENSG00000139624 ENST00000317551 9.812±0.00 7.262±0.00 0.818±0.00 4.263±0.00 4.605±3.31 3.811±1.83 1.824±0.00 5.120±4.44 1.398±0.52 3.263±2.04 0.562±0.00 11.505±8.85 13.191±1.58 7.035±2.17
ENST00000380189 N/A N/A 1.210±0.00 N/A N/A N/A N/A N/A 0.419±0.00 N/A N/A N/A N/A N/A
ENST00000422340 1.980±0.00 3.589±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000438450 N/A N/A N/A 1.949±0.00 N/A N/A N/A N/A N/A N/A 0.873±0.00 15.116±0.00 N/A N/A
ENST00000542320 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000546406 N/A N/A N/A 7.482±0.00 N/A N/A N/A N/A N/A N/A 1.321±0.00 16.563±0.00 N/A 6.729±0.00
ENST00000546514 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000546676 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000547138 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000547455 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000547787 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000547800 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000547852 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548930 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548942 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000549089 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000549389 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000549942 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550079 N/A N/A N/A N/A 3.178±0.00 N/A N/A N/A 2.917±0.00 N/A N/A 27.805±0.00 17.899±0.00 11.004±0.00
ENST00000550258 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550547 N/A N/A N/A N/A N/A N/A N/A N/A 5.428±0.00 N/A N/A N/A 26.800±0.00 17.249±0.00
ENST00000550899 N/A N/A N/A N/A N/A N/A 5.363±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000550919 4.688±0.00 N/A N/A N/A N/A 5.829±0.00 N/A N/A N/A 4.340±0.00 N/A N/A 8.576±0.00 N/A
ENST00000551005 N/A N/A N/A N/A N/A N/A N/A N/A 0.474±0.00 N/A N/A N/A N/A N/A
ENST00000551384 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551697 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551757 N/A N/A N/A 1.263±0.00 N/A N/A N/A N/A N/A N/A 0.478±0.00 N/A N/A N/A
ENST00000553122 N/A N/A N/A 3.674±1.80 N/A 3.902±0.00 N/A N/A 1.717±0.00 N/A 1.441±0.00 N/A N/A N/A
ENSG00000212496 ENST00000391194 0.641±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000221604 ENST00000408677 N/A 1.895±0.00 N/A N/A 1.421±0.00 N/A N/A N/A 2.753±0.00 N/A N/A N/A N/A N/A
ENSG00000257256 ENST00000551284 0.048±0.00 0.234±0.00 N/A 0.051±0.00 0.247±0.06 N/A 0.084±0.00 N/A N/A 0.288±0.00 N/A 0.139±0.00 0.830±0.61 N/A
ENSG00000257298 ENST00000552061 0.501±0.00 0.507±0.00 0.520±0.00 0.063±0.05 1.054±0.08 0.734±0.58 0.086±0.03 0.120±0.03 0.333±0.27 0.398±0.10 0.093±0.02 0.254±0.16 0.095±0.05 0.227±0.05
ENSG00000257531 ENST00000548666 0.050±0.00 N/A 0.290±0.00 N/A 1.114±0.00 0.335±0.09 N/A N/A N/A 0.197±0.00 N/A 0.123±0.00 0.245±0.00 0.512±0.01
ENSG00000272368 ENST00000548468 N/A N/A 0.449±0.00 N/A N/A N/A N/A N/A N/A 0.642±0.00 N/A N/A N/A N/A
ENST00000552815 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000023021 ENSMUST00000023762 15.043±4.73 23.632±4.57 15.043±1.59 10.939±5.76 21.477±6.26 13.429±2.03 6.745±1.13 13.956±1.20 2.470±1.95 16.877±4.05 2.646±0.51 27.663±7.34 26.209±10.16 8.741±3.53
ENSMUST00000109035 N/A N/A N/A N/A N/A N/A 1.710±0.59 N/A 0.107±0.00 N/A 0.281±0.05 N/A N/A 1.413±0.21
ENSMUST00000175876 N/A N/A N/A N/A N/A N/A N/A N/A 0.551±0.00 N/A N/A N/A N/A N/A
ENSMUST00000176248 N/A N/A N/A 1.632±0.00 N/A N/A N/A N/A 0.095±0.03 N/A N/A N/A N/A N/A
ENSMUST00000176627 N/A N/A N/A N/A N/A N/A N/A N/A 0.451±0.09 N/A N/A N/A N/A N/A
ENSMUST00000176970 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000023022 ENSMUST00000073691 7.106±3.78 5.342±1.42 14.213±0.43 2.110±1.35 3.606±0.90 48.136±3.60 1.394±0.33 13.586±0.52 5.957±3.55 9.441±0.99 0.592±0.24 4.514±1.47 17.557±10.71 1.284±0.55
ENSMUST00000109024 10.865±4.21 2.468±0.00 47.552±1.33 3.945±0.82 7.907±1.32 N/A 2.488±0.56 3.981±0.63 1.882±0.41 7.221±1.10 1.161±0.30 9.063±3.76 21.299±7.19 0.377±0.14
ENSMUST00000171450 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000172119 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000065643 ENSMUST00000083709 N/A N/A N/A 24.353±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000090406 ENSMUST00000168951 0.169±0.10 0.496±0.22 0.104±0.04 0.197±0.03 0.341±0.16 0.273±0.13 0.138±0.04 0.191±0.05 0.065±0.06 0.289±0.00 N/A 0.224±0.24 0.085±0.03 0.138±0.03
ENSMUSG00000090500 ENSMUST00000169887 0.459±0.20 N/A 0.284±0.00 0.248±0.16 0.546±0.24 0.733±0.34 0.165±0.10 0.291±0.11 0.077±0.03 0.153±0.03 0.103±0.01 0.401±0.40 0.185±0.11 0.077±0.00
ENSMUSG00000092014 ENSMUST00000170206 0.252±0.00 N/A 0.521±0.10 0.309±0.00 0.551±0.00 0.989±0.19 N/A N/A 0.097±0.04 0.255±0.00 N/A 1.545±0.62 0.700±0.51 N/A

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