C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Ras association (RalGDS/AF-6) and pleckstrin homology domains 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000319170 RAPH1-001 ENSG00000173166 9606 - 2:203433682-203535410 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000319170
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000319170 7.799±0.00 3.942±0.00 4.149±0.00 3.468±0.00 1.998±0.15 1.962±0.98 8.946±4.68 4.571±0.38 5.804±0.27 0.841±0.00 3.377±1.33 2.931±1.16 3.514±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000JP CIL_0000JP_0002 CGP 2:203238449-203447723
CIL_0000JQ CIL_0000JQ_0002 CGP 2:203328219-203535410
CIL_0001QX CIL_0001QX_0001 CGP 2:203394345-203738912

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005886 IEA plasma membrane
GO:0007160 IEA cell-matrix adhesion
GO:0007165 IEA signal transduction
GO:0031252 IEA cell leading edge
GO:0042995 IEA cell projection
GO:0048675 IEA axon extension

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000140485 Raph1-001 protein_coding Mus_musculus 0 4564
ENSMUST00000027168 Raph1-201 protein_coding Mus_musculus 0 1439
ENSMUST00000090293 Raph1-003 protein_coding Mus_musculus 0 1439
ENSMUST00000142258 Raph1-004 protein_coding Mus_musculus 0 771
ENSMUST00000182085 Raph1-005 protein_coding Mus_musculus 0 713
ENSMUST00000188511 Raph1-002 retained_intron Mus_musculus 0 418
ENSMUST00000189383 Raph1-006 retained_intron Mus_musculus 0 200

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