C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Ras association (RalGDS/AF-6) and pleckstrin homology domains 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000173166 RAPH1 9606 - 2:203394345-203535410 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000308091 RAPH1-002 203441470-203535335 protein_coding
  ENST00000319170 RAPH1-001 203433682-203535410 protein_coding
  ENST00000374493 RAPH1-017 203439437-203495353 protein_coding
  ENST00000418114 RAPH1-014 203444850-203495353 protein_coding
  ENST00000419464 RAPH1-013 203442078-203495353 protein_coding
  ENST00000420371 RAPH1-009 203490046-203535335 protein_coding
  ENST00000423104 RAPH1-015 203442078-203495353 protein_coding
  ENST00000428637 RAPH1-007 203489800-203533433 protein_coding
  ENST00000439222 RAPH1-011 203442078-203495353 protein_coding
  ENST00000453034 RAPH1-004 203444631-203535335 protein_coding
  ENST00000457812 RAPH1-005 203394345-203535262 protein_coding
  ENST00000465669 RAPH1-008 203495163-203535279 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000319170ENST00000419464
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000319170 7.799±0.00 3.942±0.00 4.149±0.00 3.468±0.00 1.998±0.15 1.962±0.98 8.946±4.68 4.571±0.38 5.804±0.27 0.841±0.00 3.377±1.33 2.931±1.16 3.514±0.00
ENST00000419464 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.278±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000JP CIL_0000JP_0002 CGP 2:203238449-203447723
CIL_0000JQ CIL_0000JQ_0002 CGP 2:203328219-203535410
CIL_0001QX CIL_0001QX_0001 CGP 2:203394345-203738912

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005886 IEA plasma membrane
GO:0007160 IEA cell-matrix adhesion
GO:0007165 IEA signal transduction
GO:0016772 IEA transferase activity, transferring phosphorus-containing groups
GO:0031252 IEA cell leading edge
GO:0042995 IEA cell projection
GO:0048675 IEA axon extension

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000006301 raph1 Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 protein_coding Danio_rerio
ENSDARG00000061732 RAPH1 (2 of 2) Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 protein_coding Danio_rerio
ENSMUSG00000026014 Raph1 Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 protein_coding Mus_musculus

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