C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phosphoenolpyruvate carboxykinase 1 (soluble)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000319441 PCK1-001 ENSG00000124253 9606 + 20:57561080-57568112 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000319441
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000319441 0.097±0.00 27.480±0.00 0.084±0.01 2.165±0.00 10.707±0.00 0.189±0.00 26.186±0.00 2.644±0.00 0.326±0.16 0.197±0.09 0.270±0.15 0.107±0.06 0.271±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HJ CIL_0008HJ_0001 VISTA 20:57109440-57710361
CIL_0008BA CIL_0008BA_0001 VISTA 20:57139654-57744237
CIL_0005JC CIL_0005JC_0001 CGP 20:57495966-57568112
CIL_0005K4 CIL_0005K4_0001 CGP 20:57561080-57620576

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000287 IDA magnesium ion binding
GO:0004611 IEA phosphoenolpyruvate carboxykinase activity
GO:0004613 ISS phosphoenolpyruvate carboxykinase (GTP) activity
GO:0005525 IDA:IEA GTP binding
GO:0005737 ISS cytoplasm
GO:0005829 TAS cytosol
GO:0005975 TAS carbohydrate metabolic process
GO:0006006 IMP glucose metabolic process
GO:0006094 ISS:IEA gluconeogenesis
GO:0006107 IEA oxaloacetate metabolic process
GO:0006475 IDA internal protein amino acid acetylation
GO:0006629 IEA lipid metabolic process
GO:0014823 IEA response to activity
GO:0017076 IEA purine nucleotide binding
GO:0017144 TAS drug metabolic process
GO:0019003 IEA GDP binding
GO:0030145 IDA manganese ion binding
GO:0031406 IDA carboxylic acid binding
GO:0032868 IDA response to insulin
GO:0042593 ISS glucose homeostasis
GO:0044281 TAS small molecule metabolic process
GO:0046327 ISS glycerol biosynthetic process from pyruvate
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029017 Pck1-001 protein_coding Mus_musculus 0 1956
ENSMUST00000136885 Pck1-003 retained_intron Mus_musculus 0 1456
ENSDART00000008752 pck1-001 protein_coding Danio_rerio 0 754
ENSDART00000148691 pck1-002 retained_intron Danio_rerio 0 292

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