C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phosphoenolpyruvate carboxykinase 1, cytosolic
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000136885 Pck1-003 ENSMUSG00000027513 10090 + 2:173153082-173159271 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderLiverMuscleTestisENSMUST00000136885
Transcript ID Bladder Liver Muscle Testis
ENSMUST00000136885 0.492±0.00 0.145±0.15 0.604±0.00 0.063±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YW CIL_0008YW_0002 VISTA 2:172561962-173164167
CIL_0008TD CIL_0008TD_0002 VISTA 2:172564603-173165839
CIL_0008HJ CIL_0008HJ_0002 VISTA 2:172734798-173336840
CIL_0008BA CIL_0008BA_0002 VISTA 2:172748983-173356071
CIL_0005JC CIL_0005JC_0002 CGP 2:173093609-173159273
CIL_0005K4 CIL_0005K4_0002 CGP 2:173153048-173218923

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000008752 pck1-001 protein_coding Danio_rerio 0 551
ENST00000319441 PCK1-001 protein_coding Homo_sapiens 0 1456
ENST00000467047 PCK1-002 retained_intron Homo_sapiens 0 507
ENST00000485958 PCK1-006 retained_intron Homo_sapiens 0 481

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