C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: retinoblastoma binding protein 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000122257 RBBP6 9606 + 16:24537693-24572863 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000319715 RBBP6-001 24540195-24572863 protein_coding
  ENST00000348022 RBBP6-002 24540583-24572863 protein_coding
  ENST00000381039 RBBP6-005 24540520-24572863 protein_coding
  ENST00000452655 RBBP6-003 24540496-24549401 protein_coding
  ENST00000562430 RBBP6-004 24554477-24572860 retained_intron
  ENST00000562683 RBBP6-010 24555830-24559805 protein_coding
  ENST00000564314 RBBP6-006 24537693-24570113 protein_coding
  ENST00000564726 RBBP6-008 24553256-24556333 retained_intron
  ENST00000567686 RBBP6-007 24537712-24561665 protein_coding
  ENST00000568015 RBBP6-009 24539556-24555859 protein_coding
  ENST00000568316 RBBP6-012 24539585-24540284 retained_intron
  ENST00000570185 RBBP6-011 24563280-24567370 retained_intron
  ENST00000613729 RBBP6-013 24552993-24554938 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000319715ENST00000348022ENST00000381039ENST00000452655ENST00000562430ENST00000564314ENST00000568015ENST00000613729
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000319715 3.437±0.00 3.998±0.00 0.863±0.00 2.998±0.00 0.765±0.00 1.442±0.00 2.018±1.84 1.550±1.01 1.648±0.82 0.921±0.21 1.887±0.00 2.969±1.51 2.666±0.79 9.736±4.65
ENST00000348022 N/A N/A N/A 0.449±0.00 1.314±0.02 1.838±0.64 N/A 3.963±0.00 N/A N/A 2.062±0.00 2.976±0.00 N/A 3.136±0.00
ENST00000381039 N/A N/A N/A N/A N/A N/A N/A 1.812±0.00 N/A N/A N/A 9.099±0.00 12.864±0.00 10.313±7.28
ENST00000452655 N/A N/A N/A N/A N/A N/A N/A N/A 5.821±0.00 N/A 3.002±0.00 N/A N/A N/A
ENST00000562430 N/A N/A N/A N/A 0.968±0.00 N/A 0.108±0.00 0.288±0.00 0.476±0.00 N/A N/A N/A N/A N/A
ENST00000564314 N/A N/A N/A N/A N/A N/A 0.516±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000568015 N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.764±0.00 3.801±0.00 N/A N/A N/A
ENST00000613729 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.627±0.00 N/A 3.479±0.00 1.684±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003VB CIL_0003VB_0002 CGP 16:24255553-24572863
CIL_0003V8 CIL_0003V8_0002 CGP 16:24537693-24827632

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001701 IEA in utero embryonic development
GO:0003676 IEA nucleic acid binding
GO:0004842 IDA:IEA ubiquitin-protein transferase activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IEA:IDA nucleus
GO:0005694 IEA chromosome
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0008270 IEA zinc ion binding
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0035264 IEA multicellular organism growth
GO:0042787 IDA protein ubiquitination involved in ubiquitin-dependent protein catabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0048568 IEA embryonic organ development
GO:0061053 IEA somite development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000037919 rbbp6 retinoblastoma binding protein 6 protein_coding Danio_rerio
ENSDARG00000056266 RBBP6 (2 of 71) retinoblastoma binding protein 6 protein_coding Danio_rerio
ENSDARG00000056907 RBBP6 (3 of 71) retinoblastoma binding protein 6 protein_coding Danio_rerio
ENSDARG00000056917 RBBP6 (4 of 71) retinoblastoma binding protein 6 protein_coding Danio_rerio
ENSDARG00000058527 RBBP6 (5 of 71) retinoblastoma binding protein 6 protein_coding Danio_rerio
ENSDARG00000069804 RBBP6 (6 of 71) retinoblastoma binding protein 6 protein_coding Danio_rerio
ENSDARG00000070812 RBBP6 (7 of 71) retinoblastoma binding protein 6 protein_coding Danio_rerio
ENSDARG00000077344 RBBP6 (8 of 71) retinoblastoma binding protein 6 protein_coding Danio_rerio
ENSDARG00000077475 RBBP6 (9 of 71) retinoblastoma binding protein 6 protein_coding Danio_rerio
ENSDARG00000079615 RBBP6 (10 of 71) retinoblastoma binding protein 6 protein_coding Danio_rerio
ENSDARG00000086077 ZGC:174357 Uncharacterized protein; Zgc:174357 protein protein_coding Danio_rerio
ENSDARG00000086942 RBBP6 (12 of 71) retinoblastoma binding protein 6 protein_coding Danio_rerio
ENSDARG00000087125 RBBP6 (13 of 71) retinoblastoma binding protein 6 protein_coding Danio_rerio
ENSDARG00000087708 RBBP6 (14 of 71) retinoblastoma binding protein 6 protein_coding Danio_rerio
ENSDARG00000088009 BX000700.3 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000088166 RBBP6 (16 of 71) retinoblastoma binding protein 6 protein_coding Danio_rerio
ENSDARG00000088552 RBBP6 (17 of 71) retinoblastoma binding protein 6 protein_coding Danio_rerio
ENSDARG00000088604 RBBP6 (18 of 71) retinoblastoma binding protein 6 protein_coding Danio_rerio
ENSDARG00000088658 CU041380.2 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000089037 RBBP6 (20 of 71) retinoblastoma binding protein 6 protein_coding Danio_rerio
ENSDARG00000089182 RBBP6 (21 of 71) retinoblastoma binding protein 6 protein_coding Danio_rerio
ENSDARG00000090104 RBBP6 (22 of 71) retinoblastoma binding protein 6 protein_coding Danio_rerio
ENSDARG00000090197 RBBP6 (23 of 71) retinoblastoma binding protein 6 protein_coding Danio_rerio
ENSDARG00000090522 RBBP6 (24 of 71) retinoblastoma binding protein 6 protein_coding Danio_rerio
ENSDARG00000091039 RBBP6 (25 of 71) retinoblastoma binding protein 6 protein_coding Danio_rerio
ENSDARG00000091883 RBBP6 (26 of 71) retinoblastoma binding protein 6 protein_coding Danio_rerio
ENSDARG00000092054 RBBP6 (27 of 71) retinoblastoma binding protein 6 protein_coding Danio_rerio
ENSDARG00000092356 RBBP6 (28 of 71) retinoblastoma binding protein 6 protein_coding Danio_rerio
ENSDARG00000092670 RBBP6 (29 of 71) retinoblastoma binding protein 6 protein_coding Danio_rerio
ENSDARG00000092675 RBBP6 (30 of 71) retinoblastoma binding protein 6 protein_coding Danio_rerio
ENSDARG00000092698 RBBP6 (31 of 71) retinoblastoma binding protein 6 protein_coding Danio_rerio
ENSDARG00000092821 RBBP6 (32 of 71) retinoblastoma binding protein 6 protein_coding Danio_rerio
ENSDARG00000092839 RBBP6 (33 of 71) retinoblastoma binding protein 6 protein_coding Danio_rerio
ENSDARG00000093017 RBBP6 (34 of 71) retinoblastoma binding protein 6 protein_coding Danio_rerio
ENSDARG00000093221 RBBP6 (35 of 71) retinoblastoma binding protein 6 protein_coding Danio_rerio
ENSDARG00000093329 RBBP6 (36 of 71) retinoblastoma binding protein 6 protein_coding Danio_rerio
ENSDARG00000093439 RBBP6 (37 of 71) retinoblastoma binding protein 6 protein_coding Danio_rerio
ENSDARG00000093481 RBBP6 (38 of 71) retinoblastoma binding protein 6 protein_coding Danio_rerio
ENSDARG00000093508 RBBP6 (39 of 71) retinoblastoma binding protein 6 protein_coding Danio_rerio
ENSDARG00000093654 RBBP6 (40 of 71) retinoblastoma binding protein 6 protein_coding Danio_rerio
ENSDARG00000093736 RBBP6 (41 of 71) retinoblastoma binding protein 6 protein_coding Danio_rerio
ENSDARG00000093920 RBBP6 (42 of 71) retinoblastoma binding protein 6 protein_coding Danio_rerio
ENSDARG00000093935 RBBP6 (43 of 71) retinoblastoma binding protein 6 protein_coding Danio_rerio
ENSDARG00000094032 RBBP6 (44 of 71) retinoblastoma binding protein 6 protein_coding Danio_rerio
ENSDARG00000094049 RBBP6 (45 of 71) retinoblastoma binding protein 6 protein_coding Danio_rerio
ENSDARG00000094113 RBBP6 (46 of 71) retinoblastoma binding protein 6 protein_coding Danio_rerio
ENSDARG00000094122 RBBP6 (47 of 71) retinoblastoma binding protein 6 protein_coding Danio_rerio
ENSDARG00000094152 RBBP6 (48 of 71) retinoblastoma binding protein 6 protein_coding Danio_rerio
ENSDARG00000094167 RBBP6 (49 of 71) retinoblastoma binding protein 6 protein_coding Danio_rerio
ENSDARG00000094196 RBBP6 (50 of 71) retinoblastoma binding protein 6 protein_coding Danio_rerio
ENSDARG00000094291 RBBP6 (51 of 71) retinoblastoma binding protein 6 protein_coding Danio_rerio
ENSDARG00000094335 RBBP6 (52 of 71) retinoblastoma binding protein 6 protein_coding Danio_rerio
ENSDARG00000094363 RBBP6 (53 of 71) retinoblastoma binding protein 6 protein_coding Danio_rerio
ENSDARG00000094532 RBBP6 (54 of 71) retinoblastoma binding protein 6 protein_coding Danio_rerio
ENSDARG00000094717 RBBP6 (55 of 71) retinoblastoma binding protein 6 protein_coding Danio_rerio
ENSDARG00000094733 RBBP6 (56 of 71) retinoblastoma binding protein 6 protein_coding Danio_rerio
ENSDARG00000094765 RBBP6 (57 of 71) retinoblastoma binding protein 6 protein_coding Danio_rerio
ENSDARG00000094864 RBBP6 (58 of 71) retinoblastoma binding protein 6 protein_coding Danio_rerio
ENSDARG00000094884 RBBP6 (59 of 71) retinoblastoma binding protein 6 protein_coding Danio_rerio
ENSDARG00000094940 RBBP6 (60 of 71) retinoblastoma binding protein 6 protein_coding Danio_rerio
ENSDARG00000094987 RBBP6 (61 of 71) retinoblastoma binding protein 6 protein_coding Danio_rerio
ENSDARG00000095000 RBBP6 (62 of 71) retinoblastoma binding protein 6 protein_coding Danio_rerio
ENSDARG00000095028 RBBP6 (63 of 71) retinoblastoma binding protein 6 protein_coding Danio_rerio
ENSDARG00000095166 RBBP6 (64 of 71) retinoblastoma binding protein 6 protein_coding Danio_rerio
ENSDARG00000095172 RBBP6 (65 of 71) retinoblastoma binding protein 6 protein_coding Danio_rerio
ENSDARG00000095285 RBBP6 (66 of 71) retinoblastoma binding protein 6 protein_coding Danio_rerio
ENSDARG00000095364 RBBP6 (67 of 71) retinoblastoma binding protein 6 protein_coding Danio_rerio
ENSDARG00000095367 RBBP6 (68 of 71) retinoblastoma binding protein 6 protein_coding Danio_rerio
ENSDARG00000095490 RBBP6 (69 of 71) retinoblastoma binding protein 6 protein_coding Danio_rerio
ENSDARG00000095491 RBBP6 (70 of 71) retinoblastoma binding protein 6 protein_coding Danio_rerio
ENSDARG00000095575 RBBP6 (71 of 71) retinoblastoma binding protein 6 protein_coding Danio_rerio
ENSMUSG00000030779 Rbbp6 retinoblastoma binding protein 6 protein_coding Mus_musculus

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