C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retinoblastoma binding protein 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000052135 Rbbp6-001 ENSMUSG00000030779 10090 + 7:122970564-123002557 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000052135
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000052135 2.944±2.20 8.818±3.90 2.344±0.92 7.137±2.97 3.318±1.89 4.682±0.85 2.395±0.23 2.982±1.08 3.180±0.75 2.418±0.40 2.709±0.70 7.493±1.40 10.690±5.65 20.594±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003VB CIL_0003VB_0003 CGP 7:122670492-123002557
CIL_0003V8 CIL_0003V8_0003 CGP 7:122965686-123195288

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001701 IMP in utero embryonic development
GO:0004842 ISS ubiquitin-protein transferase activity
GO:0005634 IEA nucleus
GO:0005694 IEA chromosome
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0008270 IEA zinc ion binding
GO:0016874 IEA ligase activity
GO:0035264 IMP multicellular organism growth
GO:0042787 ISS protein ubiquitination involved in ubiquitin-dependent protein catabolic process
GO:0044822 IEA poly(A) RNA binding
GO:0048568 IGI embryonic organ development
GO:0061053 IMP somite development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000319715 RBBP6-001 protein_coding Homo_sapiens 0 6785
ENST00000348022 RBBP6-002 protein_coding Homo_sapiens 0 3419
ENST00000381039 RBBP6-005 protein_coding Homo_sapiens 0 1917
ENST00000452655 RBBP6-003 protein_coding Homo_sapiens 0 604
ENST00000562430 RBBP6-004 retained_intron Homo_sapiens 0 3417
ENST00000562683 RBBP6-010 protein_coding Homo_sapiens 0 582
ENST00000564314 RBBP6-006 protein_coding Homo_sapiens 0 3801
ENST00000564726 RBBP6-008 retained_intron Homo_sapiens 0 394
ENST00000567686 RBBP6-007 protein_coding Homo_sapiens 0 1290
ENST00000568015 RBBP6-009 protein_coding Homo_sapiens 0 691
ENST00000570185 RBBP6-011 retained_intron Homo_sapiens 0 339

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