C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATR interacting protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000320211 ATRIP-001 ENSG00000164053 9606 + 3:48446733-48465655 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyMuscleOvaryPlacentaTestisENST00000320211
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Muscle Ovary Placenta Testis
ENST00000320211 0.701±0.00 2.355±0.00 0.167±0.00 1.580±0.75 0.202±0.00 1.107±0.00 2.260±0.00 1.159±0.00 2.933±1.60 2.738±0.03 10.757±4.46

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007U6 CIL_0007U6_0001 VISTA 3:47843366-48458182
CIL_0002UL CIL_0002UL_0001 CGP 3:48446710-48467645

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000077 TAS DNA damage checkpoint
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0006260 TAS DNA replication
GO:0006281 IEA DNA repair
GO:0015630 IDA microtubule cytoskeleton
GO:0070530 IDA K63-linked polyubiquitin binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000045011 Atrip-001 protein_coding Mus_musculus 0 1945
ENSMUST00000160928 Atrip-002 nonsense_mediated_decay Mus_musculus 0 1796
ENSMUST00000161521 Atrip-004 protein_coding Mus_musculus 0 1530
ENSMUST00000160217 Atrip-003 nonsense_mediated_decay Mus_musculus 0 1256

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