C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin specific peptidase 9, X-linked
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000324545 USP9X-003 ENSG00000124486 9606 + X:41085635-41236579 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonKidneyLiverLungOvaryPlacentaTestisENST00000324545
Transcript ID Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000324545 4.399±0.00 3.071±0.00 3.321±0.00 2.803±0.00 5.208±0.00 3.723±0.00 4.006±0.84 4.296±0.36 4.908±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005QE CIL_0005QE_0001 CGP X:40648306-41236579
CIL_0005QB CIL_0005QB_0001 CGP X:41085635-41364472

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 TAS negative regulation of transcription from RNA polymerase II promoter
GO:0001701 IEA in utero embryonic development
GO:0001764 IMP neuron migration
GO:0004197 TAS cysteine-type endopeptidase activity
GO:0004221 TAS ubiquitin thiolesterase activity
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0006351 TAS transcription, DNA-templated
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0007059 IEA chromosome segregation
GO:0007067 IEA mitotic nuclear division
GO:0007179 IMP transforming growth factor beta receptor signaling pathway
GO:0007292 TAS female gamete generation
GO:0008234 TAS cysteine-type peptidase activity
GO:0009791 IEA post-embryonic development
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016579 IDA protein deubiquitination
GO:0021698 IEA cerebellar cortex structural organization
GO:0021766 IEA hippocampus development
GO:0030426 IDA growth cone
GO:0030509 IDA BMP signaling pathway
GO:0036459 IEA ubiquitinyl hydrolase activity
GO:0045177 IEA apical part of cell
GO:0048675 IMP axon extension
GO:0070410 IPI co-SMAD binding
GO:0071560 IEA cellular response to transforming growth factor beta stimulus
GO:1990138 IEA neuron projection extension

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000089302 Usp9x-001 protein_coding Mus_musculus 0 11050
ENSMUST00000091188 Usp9y-001 protein_coding Mus_musculus 0 7662
ENSMUST00000169594 Usp9x-002 protein_coding Mus_musculus 0 3679
ENSMUST00000139764 Usp9x-004 retained_intron Mus_musculus 0 3171
ENSMUST00000133997 Usp9x-005 protein_coding Mus_musculus 0 2178
ENSMUST00000174762 Usp9x-006 retained_intron Mus_musculus 0 928
ENSMUST00000124097 Usp9x-003 retained_intron Mus_musculus 0 822
ENSMUST00000149021 Usp9x-007 protein_coding Mus_musculus 0 697
ENSMUST00000168236 Gm17538-201 processed_pseudogene Mus_musculus 0 327
ENSMUST00000120922 Gm15027-001 unprocessed_pseudogene Mus_musculus 0 228
ENSMUST00000118324 Gm14536-001 unprocessed_pseudogene Mus_musculus 0 228
ENSDART00000122803 usp9-202 protein_coding Danio_rerio 3e-18 100
ENSDART00000135384 usp9-001 protein_coding Danio_rerio 3e-18 100

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