C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005QB_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000124486-ENSG00000215301 CGP 9606 X:41085635-41364472
GeneTranscriptPositionBiotype
ENSG00000124486 (USP9X)
ubiquitin specific peptidase 9, X-linked 		ENST00000324545 (USP9X-003) 41085635-41236579 protein_coding
ENST00000378308 (USP9X-001) 41085635-41232597 protein_coding
ENST00000462850 (USP9X-009) 41195905-41198571 nonsense_mediated_decay
ENST00000463829 (USP9X-007) 41188066-41189922 retained_intron
ENST00000465386 (USP9X-008) 41183994-41184740 retained_intron
ENST00000467173 (USP9X-002) 41167145-41168242 retained_intron
ENST00000485180 (USP9X-010) 41228983-41229896 retained_intron
ENST00000487625 (USP9X-004) 41205059-41210654 retained_intron
ENSG00000215301 (DDX3X)
DEAD (Asp-Glu-Ala-Asp) box helicase 3, X-linked 		ENST00000399959 (DDX3X-001) 41333398-41350274 protein_coding
ENST00000441189 (DDX3X-005) 41334162-41348259 protein_coding
ENST00000457138 (DDX3X-201) 41333398-41350269 protein_coding
ENST00000478993 (DDX3X-002) 41333398-41364472 nonsense_mediated_decay
ENST00000480592 (DDX3X-003) 41334174-41338509 processed_transcript
ENST00000542215 (DDX3X-004) 41334591-41346551 processed_transcript
ENST00000610559 (DDX3X-010) 41333348-41339083 processed_transcript
ENST00000611546 (DDX3X-008) 41334670-41342520 processed_transcript
ENST00000611968 (DDX3X-012) 41346566-41348138 protein_coding
ENST00000615313 (DDX3X-007) 41334612-41342542 processed_transcript
ENST00000615742 (DDX3X-011) 41334162-41342506 nonsense_mediated_decay
ENST00000616050 (DDX3X-013) 41346361-41358000 processed_transcript
ENST00000622198 (DDX3X-009) 41334670-41342518 processed_transcript
ENST00000622373 (DDX3X-006) 41334610-41336738 retained_intron
ENSG00000223714 (RP5-1172N10.2)
 ENST00000452501 (RP5-1172N10.2-001) 41275739-41276778 lincRNA
ENSG00000226641 (RP13-13A3.1)
 ENST00000395664 (RP13-13A3.1-001) 41322601-41323111 processed_pseudogene
ENSG00000238426 (Y_RNA)
Y RNA 		ENST00000459189 (Y_RNA.1-835) 41316488-41316589 misc_RNA
ENSG00000264573 (RN7SL15P)
RNA, 7SL, cytoplasmic 15, pseudogene 		ENST00000582825 (RN7SL15P-201) 41345576-41345876 misc_RNA
CIL_0005QB_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000031010-ENSMUSG00000000787 CGP 10090 X:13071498-13294052
GeneTranscriptPositionBiotype
ENSMUSG00000000787 (Ddx3x)
DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked 		ENSMUST00000000804 (Ddx3x-001) 13280970-13294052 protein_coding
ENSMUST00000123096 (Ddx3x-004) 13287284-13288852 retained_intron
ENSMUST00000149639 (Ddx3x-005) 13287785-13289915 retained_intron
ENSMUST00000153611 (Ddx3x-003) 13281032-13287872 retained_intron
ENSMUST00000153851 (Ddx3x-002) 13281022-13292022 processed_transcript
ENSMUSG00000031010 (Usp9x)
ubiquitin specific peptidase 9, X chromosome 		ENSMUST00000089302 (Usp9x-001) 13071514-13173328 protein_coding
ENSMUST00000124097 (Usp9x-003) 13129327-13133782 retained_intron
ENSMUST00000133997 (Usp9x-005) 13160857-13169898 protein_coding
ENSMUST00000139764 (Usp9x-004) 13071514-13122161 retained_intron
ENSMUST00000149021 (Usp9x-007) 13113684-13123233 protein_coding
ENSMUST00000169594 (Usp9x-002) 13071498-13123449 protein_coding
ENSMUST00000174762 (Usp9x-006) 13129060-13132570 retained_intron
ENSMUSG00000082090 (Gm16481)
predicted gene 16481 		ENSMUST00000119074 (Gm16481-001) 13238327-13239553 processed_pseudogene
ENSMUSG00000083364 (Llph-ps2)
LLP homolog, pseudogene 2 		ENSMUST00000122000 (Llph-ps2-001) 13218210-13218602 processed_pseudogene
ENSMUSG00000084349 (Rpl3-ps1)
ribosomal protein L3, pseudogene 1 		ENSMUST00000120557 (Rpl3-ps1-001) 13202571-13203780 processed_pseudogene
ENSMUSG00000100714 (RP23-158L19.7)
RIKEN cDNA 2010308F09 gene 		ENSMUST00000186827 (RP23-158L19.7-002) 13234641-13236283 lincRNA
ENSMUST00000186931 (RP23-158L19.7-001) 13234684-13247736 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005QB_0001ENSG00000124486ENST00000324545ENST00000378308ENST00000462850ENST00000463829ENST00000465386ENST00000467173ENST00000485180ENST00000487625ENSG00000215301ENST00000399959ENST00000441189ENST00000457138ENST00000478993ENST00000480592ENST00000542215ENST00000610559ENST00000611546ENST00000611968ENST00000615313ENST00000615742ENST00000616050ENST00000622198ENST00000622373ENSG00000223714ENST00000452501ENSG00000226641ENST00000395664ENSG00000238426ENST00000459189ENSG00000264573ENST00000582825CIL_0005QB_0002ENSMUSG00000000787ENSMUST00000000804ENSMUST00000123096ENSMUST00000149639ENSMUST00000153611ENSMUST00000153851ENSMUSG00000031010ENSMUST00000089302ENSMUST00000124097ENSMUST00000133997ENSMUST00000139764ENSMUST00000149021ENSMUST00000169594ENSMUST00000174762ENSMUSG00000082090ENSMUST00000119074ENSMUSG00000083364ENSMUST00000122000ENSMUSG00000084349ENSMUST00000120557ENSMUSG00000100714ENSMUST00000186827ENSMUST00000186931
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005QB_0001ENSG00000124486ENST00000324545ENST00000378308ENSG00000215301ENST00000399959ENST00000478993ENST00000542215ENSG00000223714ENST00000452501ENSG00000226641ENST00000395664ENSG00000238426ENST00000459189ENSG00000264573ENST00000582825CIL_0005QB_0002ENSMUSG00000000787ENSMUST00000000804ENSMUST00000149639ENSMUST00000153611ENSMUST00000153851ENSMUSG00000031010ENSMUST00000089302ENSMUST00000133997ENSMUST00000169594ENSMUSG00000082090ENSMUST00000119074ENSMUSG00000083364ENSMUST00000122000ENSMUSG00000084349ENSMUST00000120557ENSMUSG00000100714ENSMUST00000186827ENSMUST00000186931
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000124486 ENST00000324545 N/A N/A N/A 4.399±0.00 3.071±0.00 3.321±0.00 N/A 2.803±0.00 5.208±0.00 3.723±0.00 N/A 4.006±0.84 4.296±0.36 4.908±0.00
ENST00000378308 11.154±0.00 5.298±0.00 7.492±0.00 9.345±0.90 9.238±1.39 7.694±1.44 8.138±0.68 10.105±3.24 9.469±6.32 7.929±2.17 13.974±1.64 3.820±3.36 4.372±0.49 7.214±2.21
ENST00000462850 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463829 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465386 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467173 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485180 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487625 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000215301 ENST00000399959 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.177±0.00 33.464±12.00 31.434±0.00 18.865±2.51
ENST00000441189 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000457138 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478993 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.185±0.00
ENST00000480592 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000542215 N/A N/A 30.270±0.00 13.634±0.00 28.309±0.00 27.896±0.00 12.557±0.00 13.790±0.00 32.540±0.00 N/A 21.482±0.00 42.695±0.00 20.341±0.00 68.049±0.00
ENST00000610559 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000611546 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000611968 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000615313 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000615742 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000616050 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000622198 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000622373 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000223714 ENST00000452501 N/A 0.106±0.00 N/A 0.479±0.04 N/A 0.069±0.00 N/A N/A N/A N/A N/A 0.281±0.21 N/A 0.034±0.00
ENSG00000226641 ENST00000395664 0.045±0.00 0.186±0.00 N/A N/A 0.292±0.00 N/A N/A N/A N/A N/A N/A 0.220±0.00 0.141±0.00 N/A
ENSG00000238426 ENST00000459189 N/A N/A N/A 0.195±0.00 0.190±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000264573 ENST00000582825 N/A 0.399±0.00 N/A N/A 0.234±0.00 N/A 0.326±0.00 0.460±0.00 0.205±0.00 N/A N/A 0.341±0.02 0.232±0.00 0.317±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000000787 ENSMUST00000000804 25.262±7.71 16.784±2.67 34.555±5.36 36.376±8.56 17.875±1.18 17.658±2.66 17.577±4.13 26.291±3.77 28.385±8.71 29.003±3.93 30.645±2.15 36.231±33.02 70.881±16.93 3.601±0.36
ENSMUST00000123096 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149639 N/A N/A N/A 59.531±0.00 N/A N/A N/A N/A N/A N/A N/A 137.656±0.00 125.170±40.10 9.987±0.00
ENSMUST00000153611 N/A N/A N/A 62.297±0.00 N/A N/A N/A N/A N/A N/A N/A 180.822±0.00 131.902±62.83 49.384±0.00
ENSMUST00000153851 N/A N/A N/A N/A N/A 13.285±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000031010 ENSMUST00000089302 7.103±1.49 4.291±0.31 10.222±0.40 15.303±2.75 4.037±1.56 2.029±0.88 6.422±0.46 7.303±1.48 5.787±0.97 7.527±0.10 6.062±2.98 7.856±6.22 22.383±9.71 3.878±0.74
ENSMUST00000124097 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133997 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 45.325±3.48 N/A
ENSMUST00000139764 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149021 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000169594 N/A 3.041±0.24 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174762 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000082090 ENSMUST00000119074 0.147±0.07 0.085±0.00 0.026±0.01 0.165±0.10 0.078±0.02 0.066±0.00 N/A 0.052±0.02 0.080±0.03 0.055±0.02 N/A 0.181±0.10 0.068±0.02 0.031±0.00
ENSMUSG00000083364 ENSMUST00000122000 0.170±0.00 N/A 0.138±0.00 0.125±0.06 0.516±0.05 N/A N/A 0.365±0.16 1.069±0.77 0.198±0.02 0.322±0.13 0.675±0.14 0.192±0.07 0.293±0.01
ENSMUSG00000084349 ENSMUST00000120557 35.579±20.29 25.157±3.68 13.233±4.10 8.491±4.64 32.423±6.90 37.713±32.39 9.047±5.66 42.245±3.98 17.253±10.83 26.826±2.52 0.241±0.11 51.994±23.79 8.189±7.81 6.667±3.81
ENSMUSG00000100714 ENSMUST00000186827 0.132±0.01 N/A 0.047±0.02 0.087±0.00 N/A 0.215±0.00 N/A 0.211±0.00 0.745±0.00 0.179±0.00 N/A 0.214±0.15 0.261±0.14 N/A
ENSMUST00000186931 N/A N/A N/A 0.077±0.04 N/A N/A N/A 0.088±0.00 N/A N/A N/A 0.090±0.00 0.139±0.00 N/A

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