C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin specific peptidase 9, X chromosome
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000089302 Usp9x-001 ENSMUSG00000031010 10090 + X:13071514-13173328 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000089302
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000089302 7.103±1.49 4.291±0.31 10.222±0.40 15.303±2.75 4.037±1.56 2.029±0.88 6.422±0.46 7.303±1.48 5.787±0.97 7.527±0.10 6.062±2.98 7.856±6.22 22.383±9.71 3.878±0.74

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005QE CIL_0005QE_0002 CGP X:12675369-13173328
CIL_0005QB CIL_0005QB_0002 CGP X:13071498-13294052

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001701 IGI in utero embryonic development
GO:0001764 IEA neuron migration
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0007179 IEA transforming growth factor beta receptor signaling pathway
GO:0008234 IEA cysteine-type peptidase activity
GO:0009791 IMP post-embryonic development
GO:0016020 IEA membrane
GO:0016579 IEA protein deubiquitination
GO:0021698 IMP cerebellar cortex structural organization
GO:0021766 IMP hippocampus development
GO:0030426 IEA growth cone
GO:0030509 IEA BMP signaling pathway
GO:0036459 IEA ubiquitinyl hydrolase activity
GO:0045177 IDA apical part of cell
GO:0048675 IMP axon extension
GO:0070410 IEA co-SMAD binding
GO:0071560 IMP cellular response to transforming growth factor beta stimulus
GO:1990138 IGI neuron projection extension

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000324545 USP9X-003 protein_coding Homo_sapiens 0 11050
ENST00000338981 USP9Y-001 protein_coding Homo_sapiens 0 9031
ENST00000378308 USP9X-001 protein_coding Homo_sapiens 0 11500
ENST00000424401 USP9YP4-001 unprocessed_pseudogene Homo_sapiens 3e-30 137
ENST00000426564 USP9Y-002 processed_transcript Homo_sapiens 0 8951
ENST00000453031 USP9Y-005 protein_coding Homo_sapiens 0 900
ENST00000462850 USP9X-009 nonsense_mediated_decay Homo_sapiens 0 621
ENST00000463829 USP9X-007 retained_intron Homo_sapiens 0 303
ENST00000465386 USP9X-008 retained_intron Homo_sapiens 0 632
ENST00000467173 USP9X-002 retained_intron Homo_sapiens 0 436
ENST00000485180 USP9X-010 retained_intron Homo_sapiens 0 580
ENST00000487625 USP9X-004 retained_intron Homo_sapiens 0 499
ENST00000625141 USP9Y-201 protein_coding Homo_sapiens 0 8800

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