C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005QE_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000180182-ENSG00000124486 CGP 9606 X:40648306-41236579
GeneTranscriptPositionBiotype
ENSG00000124486 (USP9X)
ubiquitin specific peptidase 9, X-linked 		ENST00000324545 (USP9X-003) 41085635-41236579 protein_coding
ENST00000378308 (USP9X-001) 41085635-41232597 protein_coding
ENST00000462850 (USP9X-009) 41195905-41198571 nonsense_mediated_decay
ENST00000463829 (USP9X-007) 41188066-41189922 retained_intron
ENST00000465386 (USP9X-008) 41183994-41184740 retained_intron
ENST00000467173 (USP9X-002) 41167145-41168242 retained_intron
ENST00000485180 (USP9X-010) 41228983-41229896 retained_intron
ENST00000487625 (USP9X-004) 41205059-41210654 retained_intron
ENSG00000180182 (MED14)
mediator complex subunit 14 		ENST00000324817 (MED14-005) 40648306-40735531 protein_coding
ENST00000416199 (MED14-007) 40649543-40659334 protein_coding
ENST00000433003 (MED14-006) 40653872-40664451 protein_coding
ENST00000463072 (MED14-003) 40726528-40729540 processed_transcript
ENST00000472736 (MED14-009) 40659227-40659819 processed_transcript
ENST00000482034 (MED14-001) 40713832-40735858 processed_transcript
ENST00000492219 (MED14-002) 40713878-40715051 processed_transcript
ENST00000495865 (MED14-008) 40726455-40735298 processed_transcript
ENST00000496531 (MED14-004) 40675221-40682913 processed_transcript
ENSG00000189145 (RP11-77G22.2)
 ENST00000342691 (RP11-77G22.2-001) 40907987-40908391 processed_pseudogene
ENSG00000214031 (RP11-169L17.3)
 ENST00000416158 (RP11-169L17.3-001) 40760104-40761270 processed_pseudogene
ENSG00000216866 (RPS2P55)
ribosomal protein S2 pseudogene 55 		ENST00000397318 (RPS2P55-001) 40934982-40935864 processed_pseudogene
ENSG00000232801 (SDCBPP3)
syndecan binding protein (syntenin) pseudogene 3 		ENST00000419629 (SDCBPP3-001) 40890647-40891537 processed_pseudogene
ENSG00000237661 (RP11-169L17.5)
 ENST00000424288 (RP11-169L17.5-001) 40831844-40832562 processed_pseudogene
ENSG00000237931 (CLIC4P3)
chloride intracellular channel 4 pseudogene 3 		ENST00000422221 (CLIC4P3-001) 41076999-41077750 processed_pseudogene
ENSG00000238222 (MKRN4P)
makorin ring finger protein 4, pseudogene 		ENST00000444706 (MKRN4P-001) 40834485-40836005 processed_pseudogene
ENSG00000270791 (DPRXP6)
divergent-paired related homeobox pseudogene 6 		ENST00000603022 (DPRXP6-001) 40758483-40759050 processed_pseudogene
CIL_0005QE_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000064127-ENSMUSG00000031010 CGP 10090 X:12675369-13173328
GeneTranscriptPositionBiotype
ENSMUSG00000031010 (Usp9x)
ubiquitin specific peptidase 9, X chromosome 		ENSMUST00000089302 (Usp9x-001) 13071514-13173328 protein_coding
ENSMUST00000124097 (Usp9x-003) 13129327-13133782 retained_intron
ENSMUST00000133997 (Usp9x-005) 13160857-13169898 protein_coding
ENSMUST00000139764 (Usp9x-004) 13071514-13122161 retained_intron
ENSMUST00000149021 (Usp9x-007) 13113684-13123233 protein_coding
ENSMUST00000169594 (Usp9x-002) 13071498-13123449 protein_coding
ENSMUST00000174762 (Usp9x-006) 13129060-13132570 retained_intron
ENSMUSG00000064127 (Med14)
mediator complex subunit 14 		ENSMUST00000076016 (Med14-005) 12709129-12762073 protein_coding
ENSMUST00000096495 (Med14-003) 12675369-12762073 protein_coding
ENSMUST00000115481 (Med14-002) 12679035-12716158 protein_coding
ENSMUST00000124053 (Med14-001) 12679749-12762073 retained_intron
ENSMUST00000124070 (Med14-004) 12706373-12713975 retained_intron
ENSMUSG00000077858 (Gm25063)
predicted gene, 25063 		ENSMUST00000104666 (Gm25063-201) 12870269-12870362 miRNA
ENSMUSG00000083307 (AA414768)
expressed sequence AA414768 		ENSMUST00000121924 (AA414768-001) 12936872-12938128 processed_pseudogene
ENSMUSG00000083751 (Gm14534)
predicted gene 14534 		ENSMUST00000120045 (Gm14534-001) 12944610-12944966 processed_pseudogene
ENSMUSG00000083760 (Gm14524)
predicted gene 14524 		ENSMUST00000121066 (Gm14524-001) 12913910-12914592 processed_pseudogene
ENSMUSG00000085891 (Gm14634)
predicted gene 14634 		ENSMUST00000139163 (Gm14634-001) 12762278-12821492 processed_transcript
ENSMUST00000151112 (Gm14634-002) 12762544-12818219 processed_transcript
ENSMUSG00000087424 (5730405O15Rik)
RIKEN cDNA 5730405O15 gene 		ENSMUST00000127521 (5730405O15Rik-001) 13042015-13045210 processed_transcript
ENSMUST00000130099 (5730405O15Rik-002) 13042051-13045297 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005QE_0001ENSG00000124486ENST00000324545ENST00000378308ENST00000462850ENST00000463829ENST00000465386ENST00000467173ENST00000485180ENST00000487625ENSG00000180182ENST00000324817ENST00000416199ENST00000433003ENST00000463072ENST00000472736ENST00000482034ENST00000492219ENST00000495865ENST00000496531ENSG00000189145ENST00000342691ENSG00000214031ENST00000416158ENSG00000216866ENST00000397318ENSG00000232801ENST00000419629ENSG00000237661ENST00000424288ENSG00000237931ENST00000422221ENSG00000238222ENST00000444706ENSG00000270791ENST00000603022CIL_0005QE_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005QE_0001ENSG00000124486ENST00000324545ENST00000378308ENSG00000180182ENST00000324817ENST00000433003ENSG00000189145ENST00000342691ENSG00000214031ENST00000416158ENSG00000216866ENST00000397318ENSG00000232801ENST00000419629ENSG00000237661ENST00000424288ENSG00000237931ENST00000422221ENSG00000238222ENST00000444706ENSG00000270791ENST00000603022CIL_0005QE_0002ENSMUSG00000031010ENSMUST00000089302ENSMUST00000133997ENSMUST00000169594ENSMUSG00000064127ENSMUST00000076016ENSMUST00000096495ENSMUST00000115481ENSMUST00000124053ENSMUSG00000077858ENSMUST00000104666ENSMUSG00000083307ENSMUST00000121924ENSMUSG00000083751ENSMUST00000120045ENSMUSG00000083760ENSMUST00000121066ENSMUSG00000085891ENSMUST00000139163ENSMUST00000151112ENSMUSG00000087424ENSMUST00000127521ENSMUST00000130099
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000124486 ENST00000324545 N/A N/A N/A 4.399±0.00 3.071±0.00 3.321±0.00 N/A 2.803±0.00 5.208±0.00 3.723±0.00 N/A 4.006±0.84 4.296±0.36 4.908±0.00
ENST00000378308 11.154±0.00 5.298±0.00 7.492±0.00 9.345±0.90 9.238±1.39 7.694±1.44 8.138±0.68 10.105±3.24 9.469±6.32 7.929±2.17 13.974±1.64 3.820±3.36 4.372±0.49 7.214±2.21
ENST00000462850 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463829 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465386 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467173 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485180 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487625 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000180182 ENST00000324817 N/A 1.473±0.00 0.857±0.00 0.312±0.00 0.892±0.00 1.153±0.39 0.200±0.00 1.826±0.00 1.625±0.00 1.237±0.32 1.671±0.00 1.333±0.26 1.434±0.32 0.898±0.43
ENST00000416199 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000433003 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.442±0.00 N/A N/A N/A N/A
ENST00000463072 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472736 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482034 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492219 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495865 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496531 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000189145 ENST00000342691 N/A N/A N/A N/A N/A 0.036±0.00 N/A 0.038±0.00 N/A 0.036±0.00 N/A N/A 0.064±0.00 N/A
ENSG00000214031 ENST00000416158 0.115±0.00 0.421±0.00 N/A 0.340±0.00 0.181±0.00 0.070±0.00 0.190±0.00 0.441±0.00 0.177±0.00 0.033±0.00 0.089±0.00 0.014±0.00 N/A 0.289±0.00
ENSG00000216866 ENST00000397318 0.140±0.00 0.329±0.00 N/A 0.035±0.00 0.131±0.00 0.323±0.00 0.028±0.00 N/A 0.109±0.00 0.030±0.00 1.197±0.00 0.255±0.17 0.142±0.06 0.105±0.05
ENSG00000232801 ENST00000419629 0.048±0.00 0.036±0.00 N/A 0.024±0.00 0.011±0.00 N/A 0.022±0.00 0.023±0.00 N/A 0.081±0.00 0.021±0.00 N/A 0.028±0.00 0.011±0.00
ENSG00000237661 ENST00000424288 N/A N/A N/A 0.032±0.00 N/A N/A N/A N/A N/A 0.031±0.00 0.026±0.00 N/A 0.217±0.00 0.083±0.03
ENSG00000237931 ENST00000422221 0.031±0.00 N/A N/A 0.016±0.00 0.047±0.00 0.073±0.00 0.029±0.00 0.016±0.00 N/A 0.014±0.00 0.014±0.00 N/A N/A N/A
ENSG00000238222 ENST00000444706 0.033±0.00 N/A N/A 0.576±0.00 0.012±0.00 N/A 0.284±0.00 N/A N/A 0.012±0.00 N/A 0.041±0.02 1.825±0.24 0.968±0.43
ENSG00000270791 ENST00000603022 N/A N/A N/A N/A N/A 0.114±0.00 N/A N/A N/A N/A N/A 0.138±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000031010 ENSMUST00000089302 7.103±1.49 4.291±0.31 10.222±0.40 15.303±2.75 4.037±1.56 2.029±0.88 6.422±0.46 7.303±1.48 5.787±0.97 7.527±0.10 6.062±2.98 7.856±6.22 22.383±9.71 3.878±0.74
ENSMUST00000124097 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133997 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 45.325±3.48 N/A
ENSMUST00000139764 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149021 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000169594 N/A 3.041±0.24 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174762 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000064127 ENSMUST00000076016 N/A 5.052±2.65 N/A N/A N/A 2.216±0.00 N/A N/A N/A N/A N/A 4.676±1.80 1.396±0.80 0.216±0.00
ENSMUST00000096495 4.290±2.34 2.182±0.43 6.542±0.76 6.587±0.09 3.117±0.60 3.930±1.71 1.555±0.23 7.310±1.29 3.416±2.28 3.687±0.80 1.719±0.32 7.508±3.16 3.660±2.77 0.468±0.36
ENSMUST00000115481 2.307±0.39 N/A N/A 3.094±0.45 1.865±0.25 2.419±0.00 2.362±0.54 2.328±0.63 0.919±0.00 1.894±0.27 0.755±0.01 3.381±1.09 N/A 0.578±0.00
ENSMUST00000124053 1.788±0.66 1.199±0.20 1.683±0.06 3.685±0.64 3.242±0.64 1.839±0.64 2.294±0.65 3.048±0.00 1.095±0.36 1.965±0.21 2.072±0.21 4.704±1.85 1.227±0.91 0.750±0.30
ENSMUST00000124070 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000077858 ENSMUST00000104666 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 92.175±0.00 N/A
ENSMUSG00000083307 ENSMUST00000121924 2.829±1.70 4.455±1.30 2.437±0.03 4.398±3.59 3.435±2.03 3.431±0.74 0.557±0.28 0.801±0.16 0.193±0.09 3.603±0.57 0.184±0.07 7.710±3.05 16.465±9.95 6.735±1.68
ENSMUSG00000083751 ENSMUST00000120045 N/A N/A N/A 0.039±0.00 N/A N/A N/A N/A N/A N/A N/A 0.219±0.00 0.025±0.00 N/A
ENSMUSG00000083760 ENSMUST00000121066 0.056±0.00 N/A 0.031±0.00 0.311±0.26 0.124±0.00 N/A N/A N/A N/A N/A N/A N/A 0.011±0.00 0.068±0.04
ENSMUSG00000085891 ENSMUST00000139163 0.128±0.05 0.075±0.02 0.326±0.06 1.220±0.81 0.182±0.09 0.070±0.02 0.091±0.05 0.175±0.04 0.069±0.08 0.119±0.07 0.233±0.07 0.201±0.10 0.071±0.04 0.247±0.24
ENSMUST00000151112 0.082±0.02 0.304±0.16 0.197±0.01 0.735±0.47 0.148±0.11 0.110±0.00 0.080±0.03 0.048±0.02 0.039±0.01 0.066±0.02 0.047±0.01 0.171±0.09 0.066±0.05 0.112±0.07
ENSMUSG00000087424 ENSMUST00000127521 1.113±0.10 1.250±0.56 0.820±0.23 0.885±0.55 1.074±0.23 0.700±0.20 0.385±0.12 0.893±0.23 0.662±0.25 1.143±0.22 0.153±0.06 1.418±0.68 0.255±0.20 0.269±0.09
ENSMUST00000130099 N/A N/A N/A N/A N/A 0.192±0.06 N/A N/A 0.112±0.00 N/A 0.011±0.00 0.563±0.00 N/A N/A

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