C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: catenin (cadherin-associated protein), alpha-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000325551 CTNNAL1-001 ENSG00000119326 9606 - 9:108942571-109013529 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000325551
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000325551 9.352±0.00 8.169±0.00 4.195±0.00 4.331±0.00 8.261±3.89 6.470±2.95 9.374±5.14 12.988±6.93 4.384±0.21 24.628±11.58 8.279±5.89 25.711±17.36 19.875±12.89 21.020±0.80

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001GI CIL_0001GI_0001 CGP 9:108867517-108950744
CIL_000226 CIL_000226_0002 CGP 9:108934181-109013529
CIL_0001GL CIL_0001GL_0001 CGP 9:108942569-109119945

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005829 IDA cytosol
GO:0005886 IEA plasma membrane
GO:0007155 IEA cell adhesion
GO:0007266 IDA Rho protein signal transduction
GO:0015629 IEA actin cytoskeleton
GO:0045296 IEA cadherin binding
GO:0051015 IEA actin filament binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000045142 Ctnnal1-001 protein_coding Mus_musculus 0 2254
ENSMUST00000134754 Ctnnal1-002 processed_transcript Mus_musculus 0 870
ENSMUST00000127908 Ctnnal1-003 processed_transcript Mus_musculus 0 695
ENSMUST00000107612 Ctnnal1-005 protein_coding Mus_musculus 0 599
ENSMUST00000136308 Ctnnal1-007 processed_transcript Mus_musculus 0 492
ENSMUST00000134915 Ctnnal1-008 processed_transcript Mus_musculus 0 244

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