C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: galactokinase 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000327171 GALK2-001 ENSG00000156958 9606 + 15:49155765-49331882 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverLungOvaryENST00000327171
Transcript ID Liver Lung Ovary
ENST00000327171 1.567±0.00 2.404±0.00 3.474±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002PL CIL_0002PL_0001 CGP 15:48988476-49155661
CIL_0004QE CIL_0004QE_0002 CGP 15:49106068-49367869
CIL_0002E2 CIL_0002E2_0001 CGP 15:49155656-49620931

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004335 IEA:IDA galactokinase activity
GO:0005524 IEA ATP binding
GO:0005737 IEA cytoplasm
GO:0005975 TAS carbohydrate metabolic process
GO:0006012 IEA galactose metabolic process
GO:0033858 IEA N-acetylgalactosamine kinase activity
GO:0046835 IEA carbohydrate phosphorylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028636 Galk2-003 protein_coding Mus_musculus 0 1541
ENSMUST00000094604 Galk2-001 protein_coding Mus_musculus 0 1522
ENSMUST00000110454 Galk2-002 retained_intron Mus_musculus 0 1024
ENSMUST00000131643 Galk2-005 nonsense_mediated_decay Mus_musculus 0 584
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.0000000003 73
ENSMUST00000125797 Atp13a2-003 retained_intron Mus_musculus 0.0000006 62

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