C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type IV, alpha 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000112931 Col4a5-001 ENSMUSG00000031274 10090 + X:141475385-141689234 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000112931
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000112931 2.782±2.12 1.898±0.25 13.035±0.22 0.708±0.27 1.090±0.44 2.018±0.35 3.660±0.12 3.275±0.54 0.193±0.06 8.208±0.55 0.313±0.07 3.833±1.13 1.400±0.81 0.702±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000172 CIL_000172_0003 CGP X:141165403-141689234
CIL_0002ST CIL_0002ST_0002 CGP X:141475385-141725263

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005201 IEA extracellular matrix structural constituent
GO:0005587 IDA collagen type IV trimer
GO:0005604 IDA basement membrane
GO:0005605 IDA basal lamina
GO:0007528 IMP neuromuscular junction development
GO:0031594 IDA neuromuscular junction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000328300 COL4A5-006 protein_coding Homo_sapiens 0 6865
ENST00000361603 COL4A5-001 protein_coding Homo_sapiens 0 6759
ENST00000470339 COL4A5-005 retained_intron Homo_sapiens 0 623
ENST00000483338 COL4A5-002 retained_intron Homo_sapiens 0 2839
ENST00000489230 COL4A5-003 retained_intron Homo_sapiens 0 708
ENST00000504541 COL4A5-010 protein_coding Homo_sapiens 0 444
ENST00000505728 COL4A5-011 protein_coding Homo_sapiens 0 520
ENST00000515658 COL4A5-009 protein_coding Homo_sapiens 0 449

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