C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type IV, alpha 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000112930 Col4a5-002 ENSMUSG00000031274 10090 + X:141475410-141689180 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000112930
Transcript ID Breast Colon Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000112930 0.927±0.02 0.866±0.30 1.185±0.00 0.066±0.00 0.391±0.07 4.722±3.19 0.868±0.81 0.145±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000172 CIL_000172_0003 CGP X:141165403-141689234
CIL_0002ST CIL_0002ST_0002 CGP X:141475385-141725263

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005201 IEA extracellular matrix structural constituent
GO:0005587 IDA collagen type IV trimer
GO:0005604 IDA basement membrane
GO:0005605 IDA basal lamina
GO:0007528 IMP neuromuscular junction development
GO:0031594 IDA neuromuscular junction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000328300 COL4A5-006 protein_coding Homo_sapiens 0 6859
ENST00000361603 COL4A5-001 protein_coding Homo_sapiens 0 6754
ENST00000470339 COL4A5-005 retained_intron Homo_sapiens 0 617
ENST00000483338 COL4A5-002 retained_intron Homo_sapiens 0 2839
ENST00000489230 COL4A5-003 retained_intron Homo_sapiens 0 708
ENST00000504541 COL4A5-010 protein_coding Homo_sapiens 0 444
ENST00000505728 COL4A5-011 protein_coding Homo_sapiens 0 520
ENST00000515658 COL4A5-009 protein_coding Homo_sapiens 0 449

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