C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: POU class 3 homeobox 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000328345 POU3F2-001 ENSG00000184486 9606 + 6:98834592-98839490 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000328345
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000328345 0.013±0.00 0.014±0.00 2.002±0.52 0.008±0.00 0.017±0.00 0.008±0.01 0.005±0.00 0.010±0.00 0.033±0.00 0.007±0.00 0.017±0.00 0.275±0.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007MX CIL_0007MX_0001 UCNEbase 6:97068636-99185945
CIL_0001Y3 CIL_0001Y3_0002 CGP 6:97142161-98839490
CIL_0007W2 CIL_0007W2_0001 VISTA 6:98247607-98848574
CIL_0007YV CIL_0007YV_0001 VISTA 6:98258018-98859623
CIL_0007XF CIL_0007XF_0001 VISTA 6:98341485-98943167
CIL_00082C CIL_00082C_0001 VISTA 6:98676848-99278971
CIL_0001Y8 CIL_0001Y8_0002 CGP 6:98834592-98948006

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001105 IEA RNA polymerase II transcription coactivator activity
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005667 IEA transcription factor complex
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0008284 IDA positive regulation of cell proliferation
GO:0008544 IEA epidermis development
GO:0014002 IEA astrocyte development
GO:0014044 IEA Schwann cell development
GO:0021799 IEA cerebral cortex radially oriented cell migration
GO:0021869 IEA forebrain ventricular zone progenitor cell division
GO:0021979 IEA hypothalamus cell differentiation
GO:0021985 IEA neurohypophysis development
GO:0022011 IEA myelination in peripheral nervous system
GO:0030182 IEA neuron differentiation
GO:0040018 IEA positive regulation of multicellular organism growth
GO:0042802 IPI identical protein binding
GO:0043565 IEA sequence-specific DNA binding
GO:0045595 IEA regulation of cell differentiation
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0050770 IEA regulation of axonogenesis
GO:0071310 IEA cellular response to organic substance

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000178174 Pou3f2-001 protein_coding Mus_musculus 0 2348
ENSDART00000093250 pou3f2b-001 protein_coding Danio_rerio 0 510
ENSDART00000110243 pou3f2a-201 protein_coding Danio_rerio 0 501
ENSMUST00000053491 Pou3f1-001 protein_coding Mus_musculus 0 438
ENSMUST00000078229 Pou3f4-001 protein_coding Mus_musculus 0 375

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