C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: S-phase kinase-associated protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000328392 SKP1-008 ENSG00000113558 9606 - 5:134157941-134176950 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000328392
Transcript ID Bladder Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000328392 32.639±0.00 93.498±0.00 32.748±0.00 27.302±0.00 41.321±0.00 44.474±0.00 86.777±0.00 49.740±13.91 92.803±37.43 165.278±56.71 246.000±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000GN CIL_0000GN_0002 CGP 5:134114711-134177038
CIL_00089W CIL_00089W_0001 VISTA 5:134136326-134739629

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006511 IEA ubiquitin-dependent protein catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000037324 Skp1a-001 protein_coding Mus_musculus 0 706
ENSMUST00000109072 Skp1a-002 protein_coding Mus_musculus 0 699
ENSMUST00000116595 Skp1a-005 nonsense_mediated_decay Mus_musculus 0 558
ENSMUST00000119054 Gm12988-001 processed_pseudogene Mus_musculus 0 531
ENSMUST00000147684 Skp1a-004 nonsense_mediated_decay Mus_musculus 0 520
ENSMUST00000166537 Skp1a-006 protein_coding Mus_musculus 0 254
ENSMUST00000093121 Skp1a-003 retained_intron Mus_musculus 3e-36 156

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