C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LIM domain kinase 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000331728 LIMK2-001 ENSG00000182541 9606 + 22:31212295-31280080 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000331728
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000331728 8.365±0.00 12.151±0.00 0.634±0.00 3.776±3.43 4.175±2.79 2.304±0.00 0.499±0.00 4.998±4.84 1.809±0.97 20.633±0.00 0.434±0.00 13.130±3.36 15.110±6.36 8.880±2.47

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006EW CIL_0006EW_0002 CGP 22:31212239-31292534

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004672 IEA protein kinase activity
GO:0004674 TAS protein serine/threonine kinase activity
GO:0004713 IEA protein tyrosine kinase activity
GO:0005515 IPI:IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 TAS nucleus
GO:0005737 TAS cytoplasm
GO:0006468 IEA protein phosphorylation
GO:0008270 IEA zinc ion binding
GO:0016310 TAS phosphorylation
GO:0016772 IEA transferase activity, transferring phosphorus-containing groups

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000101638 Limk2-001 protein_coding Mus_musculus 0 2538
ENSMUST00000101642 Limk2-003 protein_coding Mus_musculus 0 2462
ENSMUST00000101640 Limk2-002 protein_coding Mus_musculus 0 2385
ENSMUST00000110029 Limk2-004 protein_coding Mus_musculus 0 1912
ENSMUST00000134576 Limk2-005 processed_transcript Mus_musculus 0 1834
ENSMUST00000125832 Limk2-012 processed_transcript Mus_musculus 0 630
ENSMUST00000142926 Limk2-011 processed_transcript Mus_musculus 0 531
ENSMUST00000123689 Limk2-007 processed_transcript Mus_musculus 0 438
ENSMUST00000148091 Limk2-010 processed_transcript Mus_musculus 0 409
ENSDART00000093188 limk1a-001 protein_coding Danio_rerio 4e-32 145
ENSMUST00000147344 Limk2-009 processed_transcript Mus_musculus 0.000000000000007 88

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