C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: smoothelin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000075118 Smtn-003 ENSMUSG00000020439 10090 - 11:3517523-3539239 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENSMUST00000075118
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000075118 18.229±11.63 2.648±0.77 340.804±0.00 1.752±0.00 2.292±0.28 19.844±9.53 2.814±0.17 0.413±0.03 3.652±0.87 12.833±7.52 21.511±2.15 0.887±0.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000NL CIL_0000NL_0002 CGP 11:3514684-3540612

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0015629 IEA actin cytoskeleton

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000082614 smtnb-201 protein_coding Danio_rerio 1e-16 94
ENSDART00000144570 smtnb-001 protein_coding Danio_rerio 1e-16 94
ENST00000333137 SMTN-002 protein_coding Homo_sapiens 0 2239
ENST00000347557 SMTN-001 protein_coding Homo_sapiens 0 2512
ENST00000358743 SMTN-003 protein_coding Homo_sapiens 0 2239
ENST00000399154 SMTNL1-201 protein_coding Homo_sapiens 1e-28 132
ENST00000404574 SMTN-009 protein_coding Homo_sapiens 0 553
ENST00000460658 SMTN-006 retained_intron Homo_sapiens 0 1144
ENST00000466272 SMTN-020 retained_intron Homo_sapiens 0 239
ENST00000472911 SMTN-022 retained_intron Homo_sapiens 0 496
ENST00000489337 SMTN-004 retained_intron Homo_sapiens 0 1467
ENST00000493335 SMTN-007 retained_intron Homo_sapiens 0 553
ENST00000504335 SMTN-024 retained_intron Homo_sapiens 0 278
ENST00000527972 SMTNL1-001 protein_coding Homo_sapiens 1e-28 132
ENST00000612341 SMTN-201 protein_coding Homo_sapiens 0 2159
ENST00000619644 SMTN-202 protein_coding Homo_sapiens 0 1291
ENST00000624247 SMTN-026 protein_coding Homo_sapiens 0 806

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