C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: smoothelin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000170588 Smtn-201 ENSMUSG00000020439 10090 - 11:3517523-3539292 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000NL CIL_0000NL_0002 CGP 11:3514684-3540612

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000082614 smtnb-201 protein_coding Danio_rerio 0 350
ENSDART00000144570 smtnb-001 protein_coding Danio_rerio 1e-16 94
ENST00000333137 SMTN-002 protein_coding Homo_sapiens 0 2800
ENST00000347557 SMTN-001 protein_coding Homo_sapiens 0 2239
ENST00000358743 SMTN-003 protein_coding Homo_sapiens 0 2359
ENST00000399154 SMTNL1-201 protein_coding Homo_sapiens 6.00036e-42 176
ENST00000404574 SMTN-009 protein_coding Homo_sapiens 0 1116
ENST00000460658 SMTN-006 retained_intron Homo_sapiens 0 1144
ENST00000466272 SMTN-020 retained_intron Homo_sapiens 0 239
ENST00000472911 SMTN-022 retained_intron Homo_sapiens 0 278
ENST00000489337 SMTN-004 retained_intron Homo_sapiens 0 1467
ENST00000493335 SMTN-007 retained_intron Homo_sapiens 0 1116
ENST00000504335 SMTN-024 retained_intron Homo_sapiens 0 279
ENST00000527972 SMTNL1-001 protein_coding Homo_sapiens 6.00036e-42 176
ENST00000612341 SMTN-201 protein_coding Homo_sapiens 0 2721
ENST00000619644 SMTN-202 protein_coding Homo_sapiens 0 1291
ENST00000624247 SMTN-026 protein_coding Homo_sapiens 0 1369

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