C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: leucine-rich repeats and calponin homology (CH) domain containing 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000334859 LRCH3-004 ENSG00000186001 9606 + 3:197791274-197871585 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000334859
Transcript ID Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000334859 1.711±0.00 2.473±0.00 3.013±0.00 2.162±0.00 2.044±0.00 3.295±0.00 7.423±0.00 5.736±0.00 3.050±0.58 2.696±0.00 9.708±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006C7 CIL_0006C7_0001 CGP 3:197737179-197888436
CIL_0006C8 CIL_0006C8_0001 CGP 3:197791226-197960142

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005576 IEA extracellular region
GO:0005737 IDA cytoplasm

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000023491 Lrch3-001 protein_coding Mus_musculus 0 2242
ENSMUST00000135193 Lrch3-005 protein_coding Mus_musculus 0 2233
ENSMUST00000170201 Lrch3-012 protein_coding Mus_musculus 0 1906
ENSMUST00000156928 Lrch3-002 retained_intron Mus_musculus 0 1792
ENSMUST00000171118 Lrch3-011 protein_coding Mus_musculus 0 1574
ENSMUST00000170899 Lrch3-008 protein_coding Mus_musculus 0 1574
ENSMUST00000165616 Lrch3-010 protein_coding Mus_musculus 0 806
ENSMUST00000142290 Lrch3-004 protein_coding Mus_musculus 0 645
ENSMUST00000165826 Lrch3-006 protein_coding Mus_musculus 0 540
ENSMUST00000164486 Lrch3-007 nonsense_mediated_decay Mus_musculus 0 470
ENSMUST00000133399 Lrch3-003 processed_transcript Mus_musculus 0 405
ENSMUST00000163428 Lrch3-009 protein_coding Mus_musculus 0 403

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