C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DEAD (Asp-Glu-Ala-Asp) box helicase 3, Y-linked
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000336079 DDX3Y-003 ENSG00000067048 9606 + Y:12904831-12920478 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMusclePlacentaTestisENST00000336079
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Placenta Testis
ENST00000336079 0.015±0.00 17.141±0.00 2.816±0.00 2.061±2.05 0.008±0.00 0.807±0.80 4.835±3.70 3.409±0.00 4.409±3.00 10.054±0.50 4.440±0.00 6.636±0.43 11.367±0.16

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003723 IEA RNA binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006200 IEA ATP catabolic process
GO:0008026 IEA ATP-dependent helicase activity
GO:0016020 IDA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000000804 Ddx3x-001 protein_coding Mus_musculus 0 2822
ENSMUST00000091190 Ddx3y-001 protein_coding Mus_musculus 0 2562
ENSMUST00000188484 Ddx3y-002 nonsense_mediated_decay Mus_musculus 0 2518
ENSMUST00000149639 Ddx3x-005 retained_intron Mus_musculus 0 732
ENSMUST00000188182 Ddx3y-003 retained_intron Mus_musculus 0 725
ENSMUST00000189614 RP23-12H12.1-001 processed_pseudogene Mus_musculus 0 682
ENSMUST00000153851 Ddx3x-002 processed_transcript Mus_musculus 0 324
ENSDART00000006867 ddx3-001 protein_coding Danio_rerio 0 228
ENSDART00000102148 pl10-001 protein_coding Danio_rerio 0 196
ENSMUST00000187596 Ddx3y-004 retained_intron Mus_musculus 8e-40 171

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