C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: coiled-coil domain containing 88A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000336838 CCDC88A-002 ENSG00000115355 9606 - 2:55287842-55419613 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainColonHeartLungTestisENST00000336838
Transcript ID Adipose Brain Colon Heart Lung Testis
ENST00000336838 0.320±0.00 2.571±0.20 0.344±0.00 0.484±0.00 1.141±0.78 1.298±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000Z6 CIL_0000Z6_0002 CGP 2:55236595-55419921

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001932 ISS regulation of protein phosphorylation
GO:0003779 IEA:IDA actin binding
GO:0005515 IEA protein binding
GO:0005783 IDA endoplasmic reticulum
GO:0005794 IDA Golgi apparatus
GO:0005829 IDA cytosol
GO:0005886 IDA plasma membrane
GO:0006260 IEA DNA replication
GO:0006275 ISS regulation of DNA replication
GO:0008017 ISS microtubule binding
GO:0010975 ISS regulation of neuron projection development
GO:0016020 IDA:IEA membrane
GO:0016192 IEA vesicle-mediated transport
GO:0016477 IEA:IMP cell migration
GO:0030027 IDA lamellipodium
GO:0030032 IMP lamellipodium assembly
GO:0031410 IDA cytoplasmic vesicle
GO:0031929 ISS TOR signaling
GO:0032148 ISS activation of protein kinase B activity
GO:0032956 IEA:IMP regulation of actin cytoskeleton organization
GO:0035091 IDA phosphatidylinositol binding
GO:0042127 ISS regulation of cell proliferation
GO:0042803 IPI protein homodimerization activity
GO:0043422 IPI protein kinase B binding
GO:0061024 IDA membrane organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000040182 Ccdc88a-001 protein_coding Mus_musculus 0 5821
ENSMUST00000123561 Ccdc88a-002 protein_coding Mus_musculus 0 1676
ENSMUST00000140194 Ccdc88a-004 protein_coding Mus_musculus 0 1674
ENSMUST00000155854 Ccdc88a-003 protein_coding Mus_musculus 0 1628
ENSMUST00000109477 Ccdc88a-007 protein_coding Mus_musculus 0 562
ENSMUST00000144450 Ccdc88a-006 processed_transcript Mus_musculus 0 398
ENSMUST00000137227 Ccdc88a-005 processed_transcript Mus_musculus 0 311

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