C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rho-related BTB domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000337910 RHOBTB1-002 ENSG00000072422 9606 - 10:60869438-60944247 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000337910
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000337910 3.353±0.00 0.446±0.00 0.811±0.00 1.323±0.59 3.302±0.00 1.918±0.00 2.768±2.11 10.433±0.00 1.642±0.64 0.625±0.00 8.886±4.40 2.970±0.43 4.483±1.70 6.121±0.82

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002VT CIL_0002VT_0002 CGP 10:60869438-61453450

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005829 TAS cytosol
GO:0005886 TAS plasma membrane
GO:0006184 IEA GTP catabolic process
GO:0007165 IEA signal transduction
GO:0007264 TAS:IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0051056 TAS regulation of small GTPase mediated signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000067908 Rhobtb1-201 protein_coding Mus_musculus 0 2115
ENSMUST00000020101 Rhobtb1-001 protein_coding Mus_musculus 0 2082
ENSMUST00000164034 Rhobtb1-011 protein_coding Mus_musculus 0 1964
ENSMUST00000168117 Rhobtb1-003 nonsense_mediated_decay Mus_musculus 0 1611
ENSMUST00000164876 Rhobtb1-004 retained_intron Mus_musculus 0 1445
ENSMUST00000167384 Rhobtb1-006 protein_coding Mus_musculus 0 1417
ENSDART00000051114 rhobtb2a-201 protein_coding Danio_rerio 0 407
ENSDART00000111587 rhobtb2a-001 protein_coding Danio_rerio 0 407
ENSMUST00000163760 Rhobtb1-005 protein_coding Mus_musculus 0 217

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