C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PHD finger protein 10
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000339209 PHF10-001 ENSG00000130024 9606 - 6:169703905-169724055 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyLungOvaryPlacentaTestisENST00000339209
Transcript ID Adipose Adrenal Breast Colon Kidney Lung Ovary Placenta Testis
ENST00000339209 6.769±0.00 5.600±0.00 8.240±0.00 11.591±0.00 7.917±0.00 13.415±0.00 8.503±0.07 5.018±1.69 8.475±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004W2 CIL_0004W2_0001 CGP 6:169457212-169704856
CIL_0004W9 CIL_0004W9_0001 CGP 6:169702190-169725566
CIL_0004WA CIL_0004WA_0001 CGP 6:169703905-169751559

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007399 IEA nervous system development
GO:0008270 IEA zinc ion binding
GO:0071564 ISS npBAF complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000024657 Phf10-001 protein_coding Mus_musculus 0 2156
ENSMUST00000168938 Phf10-002 nonsense_mediated_decay Mus_musculus 0 977
ENSMUST00000171526 Phf10-005 retained_intron Mus_musculus 0 649
ENSMUST00000172054 Phf10-004 retained_intron Mus_musculus 0 486
ENSMUST00000167805 Phf10-003 retained_intron Mus_musculus 0 424
ENSMUST00000174163 1600012H06Rik-004 processed_transcript Mus_musculus 1.99965e-42 178
ENSMUST00000164837 1600012H06Rik-001 protein_coding Mus_musculus 6e-37 159
ENSMUST00000052691 1600012H06Rik-003 protein_coding Mus_musculus 6e-37 159

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