C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004W2_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000184465-ENSG00000185127 CGP 9606 6:169457212-169704856
GeneTranscriptPositionBiotype
ENSG00000130024 (PHF10)
PHD finger protein 10 		ENST00000339209 (PHF10-001) 169703905-169724055 protein_coding
ENST00000366780 (PHF10-002) 169703905-169723931 protein_coding
ENST00000464779 (PHF10-004) 169717742-169719298 processed_transcript
ENST00000480008 (PHF10-003) 169707028-169724005 retained_intron
ENST00000612128 (PHF10-201) 169707028-169724005 protein_coding
ENST00000621772 (PHF10-202) 169703908-169725566 protein_coding
ENSG00000184465 (WDR27)
WD repeat domain 27 		ENST00000423258 (WDR27-014) 169457355-169701586 protein_coding
ENST00000441385 (WDR27-002) 169647648-169660692 protein_coding
ENST00000448612 (WDR27-010) 169457212-169701653 protein_coding
ENST00000464249 (WDR27-007) 169668607-169670700 processed_transcript
ENST00000467418 (WDR27-003) 169657759-169663723 processed_transcript
ENST00000474018 (WDR27-009) 169672322-169702048 protein_coding
ENST00000476322 (WDR27-004) 169664177-169665092 retained_intron
ENST00000479310 (WDR27-001) 169457212-169649233 processed_transcript
ENST00000486490 (WDR27-005) 169662367-169666658 processed_transcript
ENST00000496752 (WDR27-006) 169664286-169670693 retained_intron
ENST00000546525 (WDR27-013) 169558321-169667275 processed_transcript
ENST00000546953 (WDR27-011) 169669521-169701653 retained_intron
ENSG00000185127 (C6orf120)
chromosome 6 open reading frame 120 		ENST00000332290 (C6orf120-001) 169702190-169704856 protein_coding

Homo sapiens Ensembl (GRCh38)

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CIL_0004W2_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000046991-ENSMUSG00000050088 CGP 10090 17:14829331-14959570
GeneTranscriptPositionBiotype
ENSMUSG00000023883 (Phf10)
PHD finger protein 10 		ENSMUST00000024657 (Phf10-001) 14945009-14961273 protein_coding
ENSMUST00000167805 (Phf10-003) 14955711-14959527 retained_intron
ENSMUST00000168938 (Phf10-002) 14947738-14961273 nonsense_mediated_decay
ENSMUST00000171526 (Phf10-005) 14945014-14946828 retained_intron
ENSMUST00000172054 (Phf10-004) 14946566-14952706 retained_intron
ENSMUSG00000046991 (Wdr27)
WD repeat domain 27 		ENSMUST00000170386 (Wdr27-201) 14829331-14934653 protein_coding
ENSMUSG00000050088 (1600012H06Rik)
RIKEN cDNA 1600012H06 gene 		ENSMUST00000052691 (1600012H06Rik-003) 14943184-14945936 protein_coding
ENSMUST00000164837 (1600012H06Rik-001) 14943230-14945934 protein_coding
ENSMUST00000174004 (1600012H06Rik-002) 14943269-14944986 protein_coding
ENSMUST00000174163 (1600012H06Rik-004) 14943271-14959570 processed_transcript
ENSMUSG00000092577 (Gm7393)
predicted gene 7393 		ENSMUST00000172650 (Gm7393-001) 14941965-14942703 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004W2_0001ENSG00000130024ENST00000339209ENST00000366780ENST00000464779ENST00000480008ENST00000612128ENST00000621772ENSG00000184465ENST00000423258ENST00000441385ENST00000448612ENST00000464249ENST00000467418ENST00000474018ENST00000476322ENST00000479310ENST00000486490ENST00000496752ENST00000546525ENST00000546953ENSG00000185127ENST00000332290CIL_0004W2_0002ENSMUSG00000023883ENSMUST00000024657ENSMUST00000167805ENSMUST00000168938ENSMUST00000171526ENSMUST00000172054ENSMUSG00000046991ENSMUST00000170386ENSMUSG00000050088ENSMUST00000052691ENSMUST00000164837ENSMUST00000174004ENSMUST00000174163ENSMUSG00000092577ENSMUST00000172650
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004W2_0001ENSG00000130024ENST00000339209ENST00000366780ENST00000480008ENST00000612128ENSG00000184465ENST00000423258ENST00000441385ENST00000448612ENST00000467418ENST00000474018ENST00000476322ENST00000479310ENST00000496752ENST00000546525ENST00000546953ENSG00000185127ENST00000332290CIL_0004W2_0002ENSMUSG00000023883ENSMUST00000024657ENSMUST00000168938ENSMUST00000171526ENSMUST00000172054ENSMUSG00000046991ENSMUST00000170386ENSMUSG00000050088ENSMUST00000052691ENSMUST00000164837ENSMUST00000174004ENSMUSG00000092577ENSMUST00000172650
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000130024 ENST00000339209 6.769±0.00 5.600±0.00 N/A N/A 8.240±0.00 11.591±0.00 N/A 7.917±0.00 N/A 13.415±0.00 N/A 8.503±0.07 5.018±1.69 8.475±0.00
ENST00000366780 6.212±0.00 N/A N/A N/A N/A 1.894±0.00 N/A 2.080±0.00 3.571±1.40 N/A 5.513±0.00 9.411±1.77 4.077±1.10 5.190±0.00
ENST00000464779 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480008 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.954±0.00 N/A N/A
ENST00000612128 6.594±0.00 N/A N/A 6.978±3.03 4.350±1.82 5.547±2.63 6.978±3.36 3.612±1.75 1.852±0.23 5.576±1.78 5.615±3.08 9.713±3.29 2.272±0.38 8.707±0.47
ENST00000621772 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000184465 ENST00000423258 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.533±0.00
ENST00000441385 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.802±0.00 N/A
ENST00000448612 N/A N/A N/A 0.314±0.00 N/A 0.283±0.00 N/A N/A N/A 0.545±0.00 N/A 4.794±0.00 0.225±0.07 2.872±1.49
ENST00000464249 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467418 N/A N/A N/A 1.080±0.00 N/A 3.010±1.60 N/A N/A 0.742±0.00 2.032±0.00 0.557±0.00 17.332±6.93 N/A N/A
ENST00000474018 0.700±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476322 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.759±0.00 N/A
ENST00000479310 N/A N/A N/A N/A 0.581±0.00 N/A N/A N/A N/A N/A N/A 5.329±1.69 N/A N/A
ENST00000486490 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496752 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.343±0.00 N/A N/A N/A
ENST00000546525 N/A N/A N/A N/A 0.166±0.00 N/A 0.115±0.00 N/A N/A N/A N/A 2.772±0.00 0.123±0.00 0.694±0.00
ENST00000546953 N/A 0.427±0.00 N/A 0.724±0.00 N/A 0.361±0.00 0.241±0.00 0.406±0.00 0.764±0.00 N/A N/A 3.153±0.00 0.101±0.00 2.133±0.00
ENSG00000185127 ENST00000332290 N/A N/A N/A 6.773±0.00 7.854±0.00 1.862±0.00 5.500±0.00 5.093±2.96 5.411±0.00 1.592±0.00 3.180±0.91 10.667±0.34 6.059±3.20 4.520±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000023883 ENSMUST00000024657 10.760±3.48 N/A 28.399±9.90 29.796±13.30 7.345±1.18 13.165±2.29 5.427±0.72 10.037±1.14 38.504±42.10 9.344±1.93 9.188±1.98 12.818±5.01 18.352±3.60 50.120±19.71
ENSMUST00000167805 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000168938 2.427±0.00 6.860±0.00 9.565±2.22 15.258±5.08 N/A 4.527±0.00 4.683±0.00 2.748±0.28 9.389±5.20 3.660±0.00 5.185±1.43 8.899±3.11 3.404±0.82 1.308±0.00
ENSMUST00000171526 N/A N/A N/A N/A 15.256±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 33.710±0.00
ENSMUST00000172054 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 48.360±0.00
ENSMUSG00000046991 ENSMUST00000170386 0.139±0.09 0.163±0.06 0.276±0.04 0.123±0.06 0.053±0.02 0.039±0.01 0.023±0.01 0.115±0.07 0.009±0.00 N/A 0.035±0.02 0.701±0.22 0.299±0.05 5.144±2.96
ENSMUSG00000050088 ENSMUST00000052691 4.593±1.80 14.855±1.98 22.684±5.85 11.674±6.74 5.674±0.00 12.076±1.30 N/A 3.908±1.33 7.271±0.78 5.768±1.06 N/A 9.651±2.51 10.899±0.92 N/A
ENSMUST00000164837 2.230±0.00 9.424±0.00 6.296±0.00 4.822±0.00 N/A N/A N/A N/A 3.567±0.00 N/A 2.187±0.05 9.926±2.23 3.661±0.93 N/A
ENSMUST00000174004 5.890±0.90 N/A N/A N/A 8.139±0.00 N/A N/A 4.922±0.06 4.424±0.64 7.012±0.00 N/A 19.003±0.00 14.974±4.55 N/A
ENSMUST00000174163 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000092577 ENSMUST00000172650 0.172±0.07 0.281±0.23 0.205±0.05 0.167±0.07 0.237±0.11 0.239±0.20 0.154±0.06 0.224±0.15 0.119±0.08 0.282±0.21 0.094±0.00 0.501±0.30 0.137±0.10 1.512±0.32

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