C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: forkhead box N2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000340553 FOXN2-001 ENSG00000170802 9606 + 2:48314710-48379294 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000340553
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000340553 1.129±0.00 0.815±0.00 1.289±0.12 2.868±1.57 1.770±0.00 0.509±0.00 3.693±0.00 1.102±0.65 5.074±0.00 0.795±0.52 2.508±2.87 0.470±0.29 0.571±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00063U CIL_00063U_0001 CGP 2:47789316-48379294
CIL_000008 CIL_000008_0001 CGP 2:48314637-48515391

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA:IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0035914 IEA skeletal muscle cell differentiation
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000112238 Foxn2-001 protein_coding Mus_musculus 0 1293
ENSMUST00000117720 Gm16205-001 processed_pseudogene Mus_musculus 0 894
ENSMUST00000134107 Foxn2-003 retained_intron Mus_musculus 0 835
ENSMUST00000141052 Foxn2-002 nonsense_mediated_decay Mus_musculus 0 732
ENSMUST00000155640 Foxn2-004 protein_coding Mus_musculus 0 403

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