C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SKI family transcriptional corepressor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000341418 SKOR1-001 ENSG00000188779 9606 + 15:67819704-67834561 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastHeartOvaryENST00000341418
Transcript ID Adipose Breast Heart Ovary
ENST00000341418 0.035±0.00 0.117±0.00 0.010±0.00 0.108±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008DX CIL_0008DX_0001 VISTA 15:67486945-68088375
CIL_00098T CIL_00098T_0001 VISTA 15:67539824-68142788
CIL_0008FO CIL_0008FO_0001 VISTA 15:67583922-68185582
CIL_0004L4 CIL_0004L4_0002 CGP 15:67819704-68198603

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IBA negative regulation of transcription from RNA polymerase II promoter
GO:0003714 IEA transcription corepressor activity
GO:0005515 IEA protein binding
GO:0005634 NAS:IEA nucleus
GO:0005667 IEA transcription factor complex
GO:0005737 IBA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 NAS regulation of transcription, DNA-templated
GO:0030425 IDA dendrite
GO:0030512 IBA negative regulation of transforming growth factor beta receptor signaling pathway
GO:0030514 IDA negative regulation of BMP signaling pathway
GO:0043025 IDA neuronal cell body
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0046332 IPI:IEA SMAD binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000055281 Skor1-002 protein_coding Mus_musculus 0 1013
ENSMUST00000116613 Skor1-003 protein_coding Mus_musculus 0 1013
ENSMUST00000119146 Skor1-001 protein_coding Mus_musculus 0 1013
ENSDART00000126643 SKOR2-203 protein_coding Danio_rerio 0 436
ENSDART00000124640 SKOR2-202 protein_coding Danio_rerio 0 436
ENSDART00000101289 SKOR2-201 protein_coding Danio_rerio 0 436
ENSDART00000100104 skor1a-001 protein_coding Danio_rerio 0 265

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