C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: trafficking protein, kinesin binding 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000045903 Trak1-201 ENSMUSG00000032536 10090 + 9:121366958-121474916 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000045903
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000045903 19.915±4.13 11.662±0.00 13.525±1.17 11.721±2.34 18.572±0.42 45.752±1.78 16.237±0.80 11.434±4.27 5.449±2.70 17.132±0.41 12.730±0.78 8.986±2.26 5.187±0.59 6.201±0.66

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000484 CIL_000484_0002 CGP 9:120960268-121474916
CIL_0007RR CIL_0007RR_0002 VISTA 9:121055298-121657466
CIL_000483 CIL_000483_0002 CGP 9:121366958-121495689

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 ISS cytoplasm
GO:0005739 ISS mitochondrion
GO:0005769 IEA early endosome
GO:0008333 IEA endosome to lysosome transport
GO:0050811 IDA GABA receptor binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000327628 TRAK1-004 protein_coding Homo_sapiens 0 3230
ENST00000341421 TRAK1-002 protein_coding Homo_sapiens 0 2084
ENST00000396175 TRAK1-001 protein_coding Homo_sapiens 0 2922
ENST00000418790 TRAK1-009 nonsense_mediated_decay Homo_sapiens 0 189
ENST00000427771 TRAK1-007 protein_coding Homo_sapiens 0 909
ENST00000449246 TRAK1-003 protein_coding Homo_sapiens 0 1783
ENST00000469506 TRAK1-008 processed_transcript Homo_sapiens 0 246
ENST00000484786 TRAK1-005 processed_transcript Homo_sapiens 0 2019
ENST00000487159 TRAK1-006 processed_transcript Homo_sapiens 0 3158
ENST00000613405 TRAK1-201 protein_coding Homo_sapiens 0 2084

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