C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
||||||
| Description: | transformer 2 beta homolog (Drosophila) | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000342294  |
TRA2B-017 |
ENSG00000136527 |
9606 | - |
3:185931754-185938013  |
protein_coding |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0008ZT | CIL_0008ZT_0001 | VISTA | 3:185444884-186046681 |
| CIL_0003YC | CIL_0003YC_0002 | CGP | 3:185643739-185938136 |
| CIL_0006RI | CIL_0006RI_0001 | CGP | 3:185915906-186110318 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0000166 | IEA | nucleotide binding |
| GO:0000375 | TAS | RNA splicing, via transesterification reactions |
| GO:0000381 | IDA | regulation of alternative mRNA splicing, via spliceosome |
| GO:0000398 | IDA | mRNA splicing, via spliceosome |
| GO:0003729 | IDA | mRNA binding |
| GO:0005515 | IPI | protein binding |
| GO:0005634 | IDA | nucleus |
| GO:0044822 | IDA | poly(A) RNA binding |
| GO:0048026 | IDA | positive regulation of mRNA splicing, via spliceosome |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000160579
|
Tra2b-002 | retained_intron | Mus_musculus | 0 | 292 |
|
ENSMUST00000162413
|
Tra2b-003 | nonsense_mediated_decay | Mus_musculus | 0 | 267 |
|
ENSMUST00000159946
|
Tra2b-004 | processed_transcript | Mus_musculus | 1.4013e-45 | 185 |
|
ENSMUST00000161286
|
Tra2b-001 | protein_coding | Mus_musculus | 2e-24 | 115 |
|
ENSMUST00000052888
|
Gm10254-201 | processed_pseudogene | Mus_musculus | 0.0000000002 | 69 |
