C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transformer 2 beta homolog (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000161286 Tra2b-001 ENSMUSG00000022858 10090 - 16:22244549-22266005 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000161286
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000161286 12.902±6.15 8.059±5.01 4.530±0.56 6.021±2.27 10.989±6.12 14.489±2.84 3.439±0.93 8.350±0.95 10.337±9.24 11.329±3.14 1.446±0.28 21.091±7.97 10.788±5.86 7.844±2.86

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008ZT CIL_0008ZT_0002 VISTA 16:21809929-22410861
CIL_0003YC CIL_0003YC_0003 CGP 16:22059009-22266005
CIL_0006RI CIL_0006RI_0002 CGP 16:22244549-22439719

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000381 ISS regulation of alternative mRNA splicing, via spliceosome
GO:0000398 ISS mRNA splicing, via spliceosome
GO:0003729 ISS mRNA binding
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0044822 IEA poly(A) RNA binding
GO:0048026 ISS positive regulation of mRNA splicing, via spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000259043 TRA2B-014 protein_coding Homo_sapiens 0 850
ENST00000342294 TRA2B-017 protein_coding Homo_sapiens 2e-24 115
ENST00000382191 TRA2B-008 protein_coding Homo_sapiens 0 935
ENST00000414862 TRA2B-016 protein_coding Homo_sapiens 0 1018
ENST00000453386 TRA2B-001 protein_coding Homo_sapiens 0 2431
ENST00000456380 TRA2B-003 nonsense_mediated_decay Homo_sapiens 0 1749
ENST00000463328 TRA2B-006 retained_intron Homo_sapiens 0 1868
ENST00000465245 TRA2B-010 processed_transcript Homo_sapiens 0 425
ENST00000466832 TRA2B-007 retained_intron Homo_sapiens 0 1066
ENST00000477939 TRA2B-013 retained_intron Homo_sapiens 0 407
ENST00000480461 TRA2B-009 retained_intron Homo_sapiens 7e-27 124
ENST00000485530 TRA2B-011 retained_intron Homo_sapiens 0 510
ENST00000487615 TRA2B-004 retained_intron Homo_sapiens 0 1751
ENST00000492417 TRA2B-005 retained_intron Homo_sapiens 0 2272
ENST00000493864 TRA2B-015 retained_intron Homo_sapiens 0 409

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